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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag

Basic information

species Zea mays
transcript GRMZM2G124434_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtca-aatctaaatcccctcggtgtta----cgtttcag
||||||||||||||| |||||||||||||||||||| |||||||||||||| || || || ||| ||||||||||||||||||||||||||||||| ||| |||| |||||   | | | |   ||  ||||    |   || |  || ||  | | | ||  | || |||    |  | |||
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagt--gttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaa--tgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag----------------
||| || |||||||| ||||| || || || || || ||||| ||| | || ||||||||||| || ||||| ||||||||||||||||||||||| ||||  |     |   |  |     | |   || ||     |||  ||    ||||    |      | | | ||  ||| |                 
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGAGACAAATGTGAGTTTAAAGGAGTCTGATGCCTGGCCTGCTGAGgtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaaaatacttaggttagcagggatatatttaatatttgactttttatag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G36740.2 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaata-caatgac---gttcctgtttgttagacatatatacagtcaaatc----taaatcccctcggtgttacg-----tttcag
||| || |||||||| ||||| || || |||||||| ||||| ||| | || || ||||| ||||||||||| |||||||| ||||| |||||||| ||||  |     |  ||||       ||  |||| |||    || |  ||| |   ||     | |||    |   | ||  |     ||| ||
GTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTCAAACAGTTGGAAACTAATGTTAGCTTGAAGGAGTCTGATGCATGGCCAGCTGAGgtttgttggtgatcttttcaattgttcaatttatgttggttcttgattttcacattgggattgggattaatgtgtttaattttgtgactgtttttag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaa--tgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag----------------
||| || |||||||| ||||| || || || ||||| ||||| ||| | || ||||||||||| |||||||| ||||||||||||||||||||||| ||||  |     |   |  |     | |   || ||     |||  ||    ||||    |      | | | ||  ||| |                 
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGgtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaaaatacttaggttagcagggatatatttaatatttgactttttatag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaa----tgacgttcctgtttgttagacatatatacagtcaaatc----taaatcccctcggtgttacg-----tttcag
||| || |||||||| ||||| || || |||||||| || || ||| | || || ||||||||||||||||| || ||||| ||||| ||||||||  |||  |     |   |    |    ||  |||| |||    || |  ||| |   ||     | |||    |   | ||  |     ||| ||
GTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGTCCGATGCATGGCCAGCTGAGgttagttggtgatcttttgaattgttcaatttatgttggttcttgattttcacattgggattgggattaatttgtttaattttgtgactttttttag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatac-aatgacgt-tcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag---------------
||| || |||||||| ||||| || || || ||||| ||||||||| | || ||||||||||| |||||||| ||||||||||||||||||||||| ||||  |     |   ||| || | | |   || ||     |||  ||    ||||    |  |   | | | ||  ||| |                
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGgtatgttgctgattctttgaattacttgttcaagttattctggttattcacttaaaaatacttaggctagcagggatatatttaatttttgacttttatag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA---CACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
|||||| ||||| |||||||| || || || || ||||| |||||| | ||    || ||||||||||||||||| || ||||| |||||||| ||||| |||      |  |   || | |||| || |    |||  |||      |    | |        | | || |  | |  ||
GTTCTTTTATGCTTCGAGTGCTTGTATCTATCCAGAGTTTAAGCAGTTGGAGACTACTAATGTGAGCTTGAAGGAGTCAGATGCTTGGCCTGCAGAGgtttgt--gattattttttat-atgttcttgctaa--agatttatgagtcttttcttatgtgatgttttgatgct--gatatag

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGC---TTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgt-gttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatc--taaatcccctcggtg---ttacgtt--tcag---------
||| ||||||||||| || || |||||||||||||| |||||||| || || ||  ||||||||   |||||||| |||||||| ||||| |||  ||| | |||  || |     | ||         | || |  |   ||  | |||| | ||  |   |  ||| |  |   |  ||||  || |         
GTTTTTCTATGCCTCAAGCGCGTGCATTTACCCTGAATTCAAGCAACTCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttctctacccttagtgggaagaacttgtggtctatg-attgaaagtctactcctttggtgaccttgagggattcgcgttgttcgggaaattcga

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCT---TGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtg------ttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccct---cggtgttacgtttcag-------
||| ||||||||||| || || || ||||||||||||||||||||||| || ||  |||||||||   |||| ||||| ||||| |||||||||  |||         ||  ||   | |  |     |   ||||   |       |||    ||  |      |    |   | | | | ||| |          
GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaattttttccttagaggagaggatcagtgttcaatgagtgattatgagttctcactgggtttttttttcctgcgattcgtcttttgttatcc

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
 || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || ||||| ||   | ||||| | ||   | |   |  || |  |    || |  |   ||||   | |   |                 
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaa-aacgaaaaaaaaaagcttcttttcttttgcggggaatctgaaaaaaaattgcactttgcag---------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ12864 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgtt-catcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
||| |||||||| || || |||||||||||||| || |||||||| ||||| || || |||||  | |||||||| ||||| ||||| || ||||| || |   |   || | ||  ||   | ||||| | | || | |      ||  || |   ||      |             
GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAAACGAACGTGAGTCTCAAGGAATCGGATGCTTGGCCAGCAGAGgtatgctgtcttccaagaaaaaaacaa-cttgtttctcaaactttttgtttttc--atgttgctctttctag-------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacg--ttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
 || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || || || ||   |   ||| | ||  |     | ||  |  || |      ||      |||| |  |       |              
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCAGCAGAAgtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaaaaatttgcactttgcag--------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaata-caatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
 || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || ||||| ||   |   ||| | |||  | | | || ||  || |      ||      |||| |  |       |              
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaaaaagaaaaaaacaaaaaagcttcttttcttttgcggggaatctgaaaaaatttgcactttgcag--------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtc--aaatctaaatcccctcggtgttacgtttcag
 || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || ||||| ||   |   ||| | ||  |       |||  ||     | |    | ||  ||| | || | | ||  |             
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaaaaagaaaaaaaaaaaaaaaaaaggttcttttcttttgtggggaatctaaaaacaaattgcactttgcag----------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ09286 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgtt-catcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag
 || |||||||| || || |||||||||||||| || |||||||| ||||| || || |||||  | |||||||| ||||| ||||| || ||||| || |   |   || | ||  ||   | ||||| | | || | |      ||  || |   ||      |             
ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAAACGAACGTGAGTCTCAAGGAATCGGATGCTTGGCCAGCAGAGgtatgctgtcttccaagaaaaaaacaa-cttgtttctcaaactttttgtttttc--atgttgctctttctag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941150|gb|EC886023.2|EC886023
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149075250|gb|EE163754.2|EE163754
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148986030|gb|EE029877.2|EE029877
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|50327568|gb|CO522694.1|CO522694
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148944625|gb|EC889756.2|EC889756
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148974477|gb|EE025259.2|EE025259
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149085930|gb|EE175457.2|EE175457
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|76014792|gb|DT941962.1|DT941962
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|211471375|gb|FL049784.1|FL049784
EST:     AGCTTG-CACAAATGTGAGCTTGAGGGA-TCTGATGCCTGGNCTGCTGAG                         CCTCA-GATGCCTATGGCTTGAAAAA-CTTGCAACC
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACC
EST: gi|50334752|gb|CO529878.1|CO529878
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGG
EST: gi|148943841|gb|EC888919.2|EC888919
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|67016994|gb|CO445743.1|CO445743
EST:     AGCTCGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGACGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149080013|gb|EE169034.2|EE169034
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148943579|gb|EC888642.2|EC888642
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149004990|gb|EE039510.2|EE039510
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|71432081|gb|DR813131.1|DR813131
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|101393240|gb|EB818551.1|EB818551
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|22545833|gb|BU098207.1|BU098207
EST:     AGCTCGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGACGCCTATGGCTTGGAGAAGC
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGC
EST: gi|67025719|gb|CO454468.1|CO454468
EST:     ATCTGATGCTTGGCCTGCTGAG                         CCTCAAGACGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCCAG
genomic: ATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|31353274|gb|CD437631.1|CD437631
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149004882|gb|EE039392.2|EE039392
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|91877152|gb|EB407109.1|EB407109
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|211468844|gb|FL049771.1|FL049771
EST:     AGCTCGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGACGCCTATGGCTTGGAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAG
EST: gi|148959388|gb|EE010762.2|EE010762
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|211466319|gb|FL049755.1|FL049755
EST:     AGCTTGACACAAATGTGAGCTTGAANGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTG
EST: gi|71766426|gb|DR964363.1|DR964363
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|78110081|gb|DV528496.1|DV528496
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148940561|gb|EC885363.2|EC885363
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|148930700|gb|EC872950.2|EC872950
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149087879|gb|EE177150.2|EE177150
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|76284993|gb|DV024561.1|DV024561
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCCTCA-GATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAA
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCC-TCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAA
EST: gi|71436318|gb|DR817368.1|DR817368
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTAGGCA-CCGAGGAGCTGTGCAA
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTG-CAACCGAGGAGCTGTGCAA
EST: gi|148932049|gb|EC875384.2|EC875384
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|31361616|gb|CD445973.1|CD445973
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|71766875|gb|DR964812.1|DR964812
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|74242204|gb|DT650118.1|DT650118
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|76017298|gb|DT944468.1|DT944468
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|71769936|gb|DR967873.1|DR967873
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|149099241|gb|EE185272.2|EE185272
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|31354646|gb|CD439003.1|CD439003
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|78116195|gb|DV534582.1|DV534582
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTG
EST: gi|71429280|gb|DR810330.1|DR810330
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|67014813|gb|CO443562.1|CO443562
EST:     AGCTCGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGACGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
EST: gi|76282387|gb|DV021955.1|DV021955
EST:     AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG
genomic: AGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 125

GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 491

GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 354

GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 183

GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcat ... tacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtcaaatctaaatcccctcggtgttacgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA