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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatgtttttagttgtcaaatgcttctcttgatgattgttctttgtttctttgtcactgtaagagatataaaccatcatttgtaatctaatgtac...

Basic information

species Zea mays
transcript GRMZM2G124365_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124365_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 3
GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcat--------gtttttagttgtcaaatgcttctcttgatgattgttctttgtttctttgtcactgtaag-agatataaaccatcatttg-taatctaatgtac
|||||||||||||||||||| ||||||||||| |||||| |  ||||||||||||| || | |||||||||| | || || |||| ||||||||||        ||| ||||   || | | |||||||  | | ||      | |   ||||| | | || | | | |||  || |||||   ||||         
GTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAGgtaatgcataaactcgtgttcttagacatctagttcttctctgtaggctttcagcat-tccttttgttagtataggcaaacatagtccttcattgactaat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148996150|gb|EE035419.2|EE035419
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|71304463|gb|DR788345.1|DR788345
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842618|gb|CD982299.1|CD982299
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842683|gb|CD982364.1|CD982364
EST:     TTTCCAAAGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATAT
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATAT
EST: gi|32842669|gb|CD982350.1|CD982350
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67040651|gb|CO466906.1|CO466906
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842206|gb|CD981887.1|CD981887
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|89763811|gb|DY690849.1|DY690849
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842514|gb|CD982195.1|CD982195
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842415|gb|CD982096.1|CD982096
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842444|gb|CD982125.1|CD982125
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304787|gb|FL143336.1|FL143336
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842790|gb|CD982471.1|CD982471
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842552|gb|CD982233.1|CD982233
EST:     TTTTCAAGGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG                         GTTNTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGGAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842439|gb|CD982120.1|CD982120
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842376|gb|CD982057.1|CD982057
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842412|gb|CD982093.1|CD982093
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67041520|gb|CO467775.1|CO467775
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|149077332|gb|EE166011.2|EE166011
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842408|gb|CD982089.1|CD982089
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|148931381|gb|EC874300.2|EC874300
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67040128|gb|CO466383.1|CO466383
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842587|gb|CD982268.1|CD982268
EST:     TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCGCA-GG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAA
genomic: TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACC-CAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAA
EST: gi|211035045|gb|FL415129.1|FL415129
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTAT
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTAT