1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGATTTAGTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGGgtgatgcagaaatacttcctgtctgtttttccttctcgttaaccactgacatctcttgactacctatacatgcag
species | Zea mays |
transcript | GRMZM2G123807_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGG GGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCTEST: gi|7162422|gb|AW520044.1|AW520044
genomic: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGGgtgatgcaga ... atacatgcagGGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGG GGTACCTTTGTCCTTCAAGATAACCGCTTTCGGTGGCTTACTCGTGTTTCTEST: gi|211101164|gb|FL105400.1|FL105400
genomic: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGGgtgatgcaga ... atacatgcagGGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCT
EST: AAAACAAATCATAGG GGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCTEST: gi|76019259|gb|DT946429.1|DT946429
genomic: AAAACAAATCATAGGgtgatgcaga ... atacatgcagGGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGG GGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCT
genomic: GGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGGgtgatgcaga ... atacatgcagGGTACCTTTGTCCTTCAAGATAACCGTTTTCGGTGGCTTACTCGTGTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGATTTAGTGATCATCTTGAAGCAATCAAATTTATCTGCAAAGACTTCTGGTCAGAGCTGTTCAAGAAACAGATTGACAATCTGAAAACAAATCATAGGgtgatgcagaaatacttcctgtctgtttttccttctcgttaaccactgacatctcttgactacctatacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA