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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagctgaaaccctgttgccatttcggtgaacacataaatttgaatttcgaaattgttaatttaatgtgctttgtgttaatag

Basic information

species Zea mays
transcript GRMZM2G123624_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123624_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g36870.1 (Oryza sativa), 5'ss of exon 3
CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggaca---gctgaaaccctgttgcc--att-tcggtgaacacataaatttg------aatttcgaaattgttaatttaatgtgcttt-gtg-ttaatag
|||||||||||||| |||||||| || || ||||| ||||| ||||| ||||||||||| ||||| ||||||    |   |||| |    |||| |   ||| |  | ||  ||   |   ||      | ||| |||  ||       |||||||||| ||| ||   ||
CACTTCCAAAGGGACATAGTTCGCGGGGTGGAGGGATACATTGTCACAGGGTCGAAGCAGGTCGAAATCGgtaaggaaatgctggactgttgtttctcaattgttcgcgagtaccgcatcctgtttatcatttttgaatgtgggttcgcaatgtgcttttgtggtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211365062|gb|FL344713.1|FL344713
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|19822322|gb|BQ048346.1|BQ048346
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211460542|gb|FL352486.1|FL352486
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211492538|gb|FL352068.1|FL352068
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|76935690|gb|DV174431.1|DV174431
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|149085095|gb|EE174602.2|EE174602
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|88753110|gb|DY537251.1|DY537251
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGC-CTTGAGAACACTTGT
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACT-GAGAACACTTGT
EST: gi|71765024|gb|DR962961.1|DR962961
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211152488|gb|FL335975.1|FL335975
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211050403|gb|FL363821.1|FL363821
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTAGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211178619|gb|FL327172.1|FL327172
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|71768414|gb|DR966351.1|DR966351
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|33102856|gb|CF062816.1|CF062816
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211163871|gb|FL345465.1|FL345465
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211026561|gb|FL468573.1|FL468573
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211265433|gb|FL346828.1|FL346828
EST:     CGGGGCGTCGAGGGCTACATAGTCACGGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGNTTATGTGAGGATGNGAAGAAGTATGGCACTGAGAACACTTGT
genomic: CGGGGCGTCGAGGGCTACATAGTCACGGGG-TCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAG-TTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGT
EST: gi|71434707|gb|DR815757.1|DR815757
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211177242|gb|FL341479.1|FL341479
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAWGAAGTATGGCACTGAGAACACTTGT
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGT
EST: gi|211244356|gb|FL352760.1|FL352760
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|20506722|gb|BQ279315.1|BQ279315
EST:     TCGGGGCGTCGAGGGCT-CATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211543242|gb|FL317104.1|FL317104
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGMAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211520282|gb|FL356688.1|FL356688
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211181873|gb|FL366111.1|FL366111
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211023761|gb|FL452145.1|FL452145
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211293997|gb|FL361747.1|FL361747
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|33102965|gb|CF062925.1|CF062925
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|71328410|gb|DR800842.1|DR800842
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211389151|gb|FL356154.1|FL356154
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211430360|gb|FL347862.1|FL347862
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|74244904|gb|DT652818.1|DT652818
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211494820|gb|FL326686.1|FL326686
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211293996|gb|FL361746.1|FL361746
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|74239024|gb|DT646938.1|DT646938
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211470983|gb|FL363735.1|FL363735
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211314173|gb|FL331842.1|FL331842
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGA
EST: gi|211529255|gb|FL011602.1|FL011602
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
EST: gi|211250291|gb|FL313176.1|FL313176
EST:     TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG                         GGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA
genomic: TCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 359

CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTACCAGTGGTAGCACACTGTCGAAGGCGGCATTAAGTTTTGCTAAGGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTACCAGTGGTAGCACACTGTCGAAGGCGGCATTAAGTTTTGCTAAGGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 140

CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTACCAGTGGTAGCACACTGTCGAAGGCGGCATTAAGTTTTGCTAAGGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 235

CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagct ... gtgttaatagGGAACAAGTTATGTGAGGATGGGAAGAAGTATGGCACTGAGAACACTTGTACCAGTGGTAGCACACTGTCGAAGGCGGCATTAAGTTTTGCTAAGGCACG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGgtggacagctgaaaccctgttgccatttcggtgaacacataaatttgaatttcgaaattgttaatttaatgtgctttgtgttaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC