1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACGTAGTCTGCCCCAACTGCGGCCACGCCGCCGTCCTCGGCGAGATGTCGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccgcctcggccgctccctccctagtccctacctacttagctcgctgcttaaaccctaagcgccacactgcactgcatgaaagaatcctgggctaacactcttcatccatccag
species | Zea mays |
transcript | GRMZM2G123140_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|93281069|gb|EB673333.1|EB673333
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|78074346|gb|DV502780.1|DV502780
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|148938577|gb|EC882901.2|EC882901
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|78083048|gb|DV511441.1|DV511441
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|86472399|gb|DY238769.1|DY238769
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|89250163|gb|DY621949.1|DY621949
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|93013152|gb|EB638672.1|EB638672
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|76911032|gb|DV164134.1|DV164134
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|76913964|gb|DV165346.1|DV165346
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGGGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|50330271|gb|CO525397.1|CO525397
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|93013982|gb|EB639502.1|EB639502
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGGTACGGCGGCGGCCGACAGCCEST: gi|88754724|gb|DY538865.1|DY538865
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCC-GGTACGGCGGCGGCCGACAGCC
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|88756590|gb|DY540731.1|DY540731
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|50324011|gb|CO519137.1|CO519137
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|148954731|gb|EC900184.2|EC900184
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|33467199|gb|CF244248.1|CF244248
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|50333731|gb|CO528857.1|CO528857
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|71426041|gb|DR807091.1|DR807091
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|88748232|gb|DY532373.1|DY532373
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGEST: gi|76922345|gb|DV168961.1|DV168961
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACGTAGTCTGCCCCAACTGCGGCCACGCCGCCGTCCTCGGCGAGATGTCGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccgcctcggccgctccctccctagtccctacctacttagctcgctgcttaaaccctaagcgccacactgcactgcatgaaagaatcctgggctaacactcttcatccatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC