Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttctcaccttatccattcccctgaaatcgtcttcagtggaaccattatttgtctgttgcagtagatgcaatttttgcaatgctttcttcagtca...

Basic information

species Zea mays
transcript GRMZM2G122937_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122937_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g45070.1 (Oryza sativa), 5'ss of exon 3
ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttctcacctt-atccattcccctgaaatcgtcttcagtggaaccattatttgtctgttgcagtagatgcaatttttgcaatgctttcttcagtca
|| | |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| || || || || ||      || | |  |   || ||  | ||  ||      |    |   ||    | | | |||                
ATGTTGCTCTTGCAAGGGTGGAAACTGAGAAGAGGAACTCATTGATCAAAGCATGGGAGGAAAATGAGAAGACAAAAGCTGAGAACAAgtatgttactgacttttatacaccagtatgcattttttccca-tgtgatcaacatgaa---gaacgaactgacatcaatgtcgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18168286|gb|BM338126.1|BM338126
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGGTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|211265456|gb|FL003939.1|FL003939
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|16921666|gb|BM075240.1|BM075240
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|211416317|gb|FL076963.1|FL076963
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|13178708|gb|BG349966.1|BG349966
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18172733|gb|BM348121.1|BM348121
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18174754|gb|BM350142.1|BM350142
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18179208|gb|BM380418.1|BM380418
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18180045|gb|BM381255.1|BM381255
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18175084|gb|BM350472.1|BM350472
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|32824753|gb|CD964475.1|CD964475
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|83278839|gb|DV942847.1|DV942847
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18172642|gb|BM348030.1|BM348030
EST:     TCTTTGATCAAAGCTTGGAAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18165727|gb|BM335566.1|BM335566
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|13381780|gb|BG458335.1|BG458335
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|17930789|gb|BM267749.1|BM267749
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|16920671|gb|BM074771.1|BM074771
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18168900|gb|BM338740.1|BM338740
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|28986517|gb|CB351176.1|CB351176
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|17931968|gb|BM268928.1|BM268928
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|32794689|gb|CD946925.1|CD946925
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|6601635|gb|AW256181.1|AW256181
EST:     AAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGANCAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: AAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18170056|gb|BM339896.1|BM339896
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGGATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18162835|gb|BM332674.1|BM332674
EST:     TGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|14243967|gb|BG841745.2|BG841745
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|21891777|gb|BQ744990.1|BQ744990
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACCCAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|148966674|gb|EE017731.2|EE017731
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|45847967|gb|CN071910.1|CN071910
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACCCAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|15214758|gb|BI431067.1|BI431067
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACCCAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|28986148|gb|CB350993.1|CB350993
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|86472908|gb|DY239278.1|DY239278
EST:     TGGGAGGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|17930420|gb|BM267380.1|BM267380
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18170396|gb|BM340236.1|BM340236
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|149069632|gb|EE158017.2|EE158017
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|108953322|gb|EC364694.1|EC364694
EST:     GAAGAGAATGAGAAGACCAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: GAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18167107|gb|BM336946.1|BM336946
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18167362|gb|BM337201.1|BM337201
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18176812|gb|BM351745.1|BM351745
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|148944466|gb|EC889583.2|EC889583
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18174579|gb|BM349967.1|BM349967
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18165886|gb|BM335725.1|BM335725
EST:     TCTTTGATCAAAGCTTGGAAAGAGAATGAGAAGGCAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACGCAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|60345190|gb|DN212163.1|DN212163
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|15053632|gb|BI359177.1|BI359177
EST:     TTGGGAAGAGAATGAGAAGACAAAAGCTGAGACCAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18165653|gb|BM335492.1|BM335492
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|18163345|gb|BM333184.1|BM333184
EST:     TCTTTGATCANAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|213171583|gb|FM184654.1|FM184654
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
EST: gi|15100443|gb|BI396234.1|BI396234
EST:     TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAA                         GGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC
genomic: TCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 322

ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGCAAACATAGAAGCTGAACTGAAGAAGATTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2394

ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGCAAACATAGAAGCTGAACTGAAGAAGATTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2630

ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGCAAACATAGAAGCTGAACTGAAGAAGATTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1672

ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttct ... actgtgacagGGCTGCTAAGAAAGTATCCGCTATTCTTTCATGGGAAAACACAAAGAAAGCAAACATAGAAGCTGAACTGAAGAAGATTGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTCGCTCTTGCAAGGGTGGAAACAGAGAAGAGGAACTCTTTGATCAAAGCTTGGGAAGAGAATGAGAAGACAAAAGCTGAGAACAAgtatgtttctcaccttatccattcccctgaaatcgtcttcagtggaaccattatttgtctgttgcagtagatgcaatttttgcaatgctttcttcagtca

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA