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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATACTATCTTGCTTGCGCGTGTGGTGAGCTATATGCACCTCCAAGTGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAGgtaatttcttgtacaaaaatgacatgaaacatgtattttccttttttttattctttcttttgggaccttgaggtgagctgttgggacgggttgaacgttg...

Basic information

species Zea mays
transcript GRMZM2G122843_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g49570.1 (Oryza sativa), 5'ss of exon 3
AAAGAATACTATCTTGCTTGCGCGTGTGGTGAGCTATATGCACCTCCAAGTGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAGgtaatttcttgtacaaaaatgacatgaaacatgtattt--tccttttttttattctttcttttgggacct-tgaggtgagctgttgggacgggttgaacgttg
||||| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| | ||||| |  ||||||  |||| | | |||  ||  | |  |||||  ||        || | |    ||     ||   |   |  ||| |   
AAAGAGTACTACCTTGCTTGTGCGTGTGGTGAGCTGTATGCACCGCCAAGTGCTTATGTTGCTTTGTTTGGTCTAACTGTTCAGCAAACATTTCTCAGAGgtaattgcatgtactatgatgacacaaaacttatgtttcatcgatgtggttattggttaaacacaaacttattttatgtttcatttttagcaggagaaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8102637|gb|AW927287.1|AW927287
EST:     TGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAG                         GTGTCCTTGAGAAAGTTGGAATTGAACCGGAAATTCAACGAATTGGTAAAT
genomic: TGCTTATGTTGCCCTGTTTGGCCTAACTGTTCAGCAAACATTTCTCAGAGgtaatttctt ... catcggtaagGTGTCCTTGAGAAAGTTGGAATTGAACCGGAAATTCAAAGAATTGGTAAAT