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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTCCGCGGCCTGCAGGTCCGCCGTAGCGCCGGCGACTGGGTCGACGTGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagcaaccaacatcgttccagctaattaagctaggtatacatcttgtgcatgttggctgtatcgtccctactctctactatagctagcgtgccc...

Basic information

species Zea mays
transcript GRMZM2G122280_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122280_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g61610.3 (Oryza sativa), 5'ss of exon 2
GCACGTCCGCGGCCTGCAGGTCCGCCGTAGCGCCGGCGACTGGGTCGACGTGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgta-atatagcaaccaacatcgttccagctaattaagctaggtatacatcttgtgcatgttggctgtatcgtc-cctactctctactatagctagcgtgccc
 ||||| |||||||| ||||| |||||  | | |||| ||||||||  |||||  ||| ||| ||||||||||||||||||||||||||||||  |  ||||| | |||  |   |  |    |  |  ||||||| | | |   | ||  |    ||  ||||| |  | |  |||    |  |  ||  ||   |     
CCACGTTCGCGGCCTCCAGGTACGCCGCCGTGACGGCCACTGGGTCACCGTGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacata-tatgtaggacttatataattaattaatcaaagagca-ataatcactatcgtggcttttccatgacctgggattaagaattactcatgattaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472610|gb|EB701568.1|EB701568
EST:     TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAG                         ATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
genomic: TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagc ... gcatggacagATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
EST: gi|71312883|gb|DR792967.1|DR792967
EST:     TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAG                         ATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
genomic: TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagc ... gcatggacagATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
EST: gi|71312885|gb|DR792968.1|DR792968
EST:     TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAG                         ATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
genomic: TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagc ... gcatggacagATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
EST: gi|78077395|gb|DV505829.1|DV505829
EST:     TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGGGACCAAGTCCAG                         ATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
genomic: TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagc ... gcatggacagATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
EST: gi|71429688|gb|DR810738.1|DR810738
EST:     TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAG                         ATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC
genomic: TGCGCCCCGTCCGCGACGCCTTCATCGTCAACGTCGGCGACCAAGTCCAGgtaatatagc ... gcatggacagATAATGAGCAACTCCGTGTACAAGAGCGTGGAGCACCGGGTGGTCGTGAAC