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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcag

Basic information

species Zea mays
transcript GRMZM2G122039_T06
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 3
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaaca-tgcatctgcag--------------------------------------------
|| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| || || || ||||||||||| ||||||||||||||||   |      |  ||  |  || ||  | ||    |  | ||| | ||      |||| |   | | |  ||||| |  |                                             
AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTgtaagtatctgcatgt-gtgtgtgcaatatcgcatatc----tggaaccaaacaaa---tgatttatggagaagctctgcatatataagctaggttaataacatattttctgtggggtgcatctgcaggtag

upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt-gtcaagccagagaagaaccaattttttatggaacatgcatctgcag
   ||| | || ||  |  |   ||||||| |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  ||   || | | |  | | | |   |||||| |    ||  | | | |||    |  |  || ||             
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag--------

upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt--gtcaagccagagaagaaccaattttttatggaacatgcatctgcag
   ||| | || ||  |  |   ||||||  |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  |     | | | |  | | | ||  ||||||  ||          |    |  ||    |    | | || | | ||||
GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattgtttggttagtaaataagcattgagtcatttggtttgcttgtgtattctcttataacatcataatcctgta-ccgcag

upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagt-actcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcag
  ||| ||||||||| |  |   ||||||| |||| ||||| || |||||||| || || ||||| ||||||  |||||| ||||||||||||||| ||| |      | |   | ||| | ||||     | | |   |    ||                                
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgtt---attttgctgtttcatcatatgatatcttctaaag------------------------------

upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: AT2G01090.2 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcg--------ttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcag-------------------------------
                |  |  |||||||  |||| |||||||| |||||||||||||| ||||||||||||   ||  | |||||||||||||||    |        ||  | |  | ||| | |   || |  |   | ||   | | |   | | | ||    |  |   | | | | |||                               
---------------ATCCAAGATGATGAGTCTGGCCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGTAAGTGTGTGAGTGCTGTTTTTCTgtatacacctaaagtttcgcgaaactaaaatgacaaagacagctacttggagtctatttttc-tttccagggttatataaaatgatgtggatgcttaacat

upper sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
lower sequence: AT1G15120.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagt-actcgt----tcccagcttgc-actttaccgtttgtcattgtcaagccagagaagaaccaattttttat-ggaacatgcatctgcag
  ||| ||||||||| |  |   ||||||| |||| ||||| || |||||||| || || ||||| ||||||  |||||| ||||||||||||||| ||| |     |   |  ||||   || | | | ||  ||  || |   ||      ||  |  |   || |||   || |||| |||
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgttattttgctgtttcatcatatgatatcttctaa--agtttgatactgagatgaaattggattttggatcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37395178|gb|CF634869.1|CF634869
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCACCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|15499626|gb|BI596139.1|BI596139
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGGTAGCACCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGA
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAG----CATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGA
EST: gi|15312761|gb|BI478359.1|BI478359
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCACCAAAGCTCTTTAAGAAGC
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGC
EST: gi|211526993|gb|FL156380.1|FL156380
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523991|gb|FL156373.1|FL156373
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         ----CATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523992|gb|FL156374.1|FL156374
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523994|gb|FL156376.1|FL156376
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523996|gb|FL156378.1|FL156378
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|74035153|gb|DT535643.1|DT535643
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|33092405|gb|CF052399.1|CF052399
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523997|gb|FL156379.1|FL156379
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|6671465|gb|AW282244.1|AW282244
EST:     AACACTGCACTGGGCAGTACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211526995|gb|FL156382.1|FL156382
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211526998|gb|FL156385.1|FL156385
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211526996|gb|FL156383.1|FL156383
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         ----CATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|78026630|gb|DV495017.1|DV495017
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211526994|gb|FL156381.1|FL156381
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211523990|gb|FL156372.1|FL156372
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAWAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|95107584|gb|EB739813.1|EB739813
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|211526997|gb|FL156384.1|FL156384
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
EST: gi|32808494|gb|CD960728.1|CD960728
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCTTCAAAGCTCTTTA
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTA
EST: gi|211523995|gb|FL156377.1|FL156377
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         ----CATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG