Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattttatttgcctttattattttgatttctattttttaggctgaattcatgtgatgcttcgggcaataaaaag...

Basic information

species Zea mays
transcript GRMZM2G121452_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g25420.2 (Oryza sativa), 5'ss of exon 3
ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattttatttgcctttattattttgatttctattttttaggctgaattcatgtgatgcttcgggcaataaaaag
|||| ||||||||||| |||||| ||||||||||| |||| ||||||||||| |||||| | || || || || || || |||||||||||||||||||||||||||| |    || |      ||  || | ||  | | ||||   |||    || |  ||| |    |  | || |  |  |     | || |    
ACATCTATGAGCATGCAGTTGTTCTGAGTGTGAAAATTGAAGACCAAGATGCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcctgtctacacttcacatcagttctgttaccgtatattcaattgtaggctgtcattttgatgcacgtaattttcttttatctaccattagttt

upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G25730.1 (Glycine max), 5'ss of exon 3
ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattttatttgcctttattattttgatttctattttttaggctgaattcatgtgatgcttcgggcaataaaaag---
| || || ||||||||||||||  | |||||||||  |||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |  ||| | |||| |  | ||  |  |||  ||| |  | | |     |   |   | | ||    | |           ||  || | ||||  |||    || | |||    
ATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgt-aacttttcttgtcccttttttttcactctgaagacagctg--aatctgcaaccaaagcaaacaatggacatcctctgattgttcacttaacataaacctg

upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G08690.1 (Glycine max), 5'ss of exon 3
ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattt-----tatttgcctttattattttgatttct-attttttaggctgaattcatgtgatgcttcgggcaataaaaag
| || |||||||||||||||||  | ||||||||| ||||||| |||||||| || ||| | ||||||| |||| ||||||||||||| |  ||| | |||| | || ||  |  |||  ||| |  |  |     ||| |   |||| | |   ||   || | | || |  |  |    |       | ||     ||      
ATATATATGAGCATGCTGTTGTCCTTAGTGTGAAAATTGAGGATCAAGATGCTTTCGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttattcttgtcccttttttttcacatataaatatatatttttactctgaagaaagctgaatcttcaaccaaagcaaacagtggacatctcctgat------

upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G64520.1 (Arabidopsis thaliana), 5'ss of exon 3
ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattttatttgcctttattattttgatttctattttttaggctgaattcatgtgatgcttcgggcaataaaaag
||||||||||||||||||||||| | || || |||   ||||| |||||||| |||||  | ||||||| ||||||||| ||||| ||  ||||| |  ||| |         || |   | ||   ||| | |||  | || |  ||| |  |   || | ||         |  |    |||  | |           
ACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGCTGAAACCTTACTATGTGGATGCCAGgtaaagaaagaaccaactg-tctgaacattatctttttcattttcttttggtctaacatatctt--------cttttcctctgcaccag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50322448|gb|CO517574.1|CO517574
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|31350060|gb|CD434417.1|CD434417
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|28873350|gb|CB329351.1|CB329351
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|71314411|gb|DR793830.1|DR793830
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76925420|gb|DV170446.1|DV170446
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32858209|gb|CD997890.1|CD997890
EST:     GAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTAAATCT
genomic: GAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|60346094|gb|DN213067.1|DN213067
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211374254|gb|FL175470.1|FL175470
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211061319|gb|FL214578.1|FL214578
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCA
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCA
EST: gi|71421223|gb|DR805346.1|DR805346
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76290008|gb|DV029576.1|DV029576
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|91877590|gb|EB407547.1|EB407547
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|71447603|gb|DR828653.1|DR828653
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211371593|gb|FL175458.1|FL175458
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|74245478|gb|DT653392.1|DT653392
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32910063|gb|CF014875.1|CF014875
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTAAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|74246334|gb|DT654248.1|DT654248
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76285525|gb|DV025093.1|DV025093
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211061322|gb|FL214581.1|FL214581
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211410327|gb|FL477489.1|FL477489
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|4152193|gb|AI372327.1|AI372327
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211371595|gb|FL175460.1|FL175460
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211374252|gb|FL175468.1|FL175468
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGG
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGG
EST: gi|211374250|gb|FL175466.1|FL175466
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211371597|gb|FL175462.1|FL175462
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211061318|gb|FL214577.1|FL214577
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|50324364|gb|CO519490.1|CO519490
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32919291|gb|CF024103.1|CF024103
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTAAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211374251|gb|FL175467.1|FL175467
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76909132|gb|DV163238.1|DV163238
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|50323893|gb|CO519019.1|CO519019
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211371596|gb|FL175461.1|FL175461
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|28873669|gb|CB329625.1|CB329625
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|71444673|gb|DR825723.1|DR825723
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32912839|gb|CF017651.1|CF017651
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTAAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|89251271|gb|DY623057.1|DY623057
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|31351657|gb|CD436014.1|CD436014
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|91049533|gb|EB159951.1|EB159951
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76015137|gb|DT942307.1|DT942307
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|88751295|gb|DY535436.1|DY535436
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|93282632|gb|EB674896.1|EB674896
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|33091534|gb|CF051528.1|CF051528
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTAAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|31352805|gb|CD437162.1|CD437162
EST:     CGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: CGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211058357|gb|FL214575.1|FL214575
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAG
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAG
EST: gi|31355614|gb|CD439971.1|CD439971
EST:     GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 209

ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCCGAATTCCACACTGAGCTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 216

ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCCGAATTCCACACTGAGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCCGAATTCCACACTGAGCTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 214

ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctt ... atttatgcagTGGCATAATTCCCGCCTCGCCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCCGAATTCCACACTGAGCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATTTATGAGCATGCTGTTGTTTTGAGTGTGAAACTTGAGGACCAAGATGCGTTTGAACGCGATTTCTGCCAGCTGAAGCCTTATTACATGGATACATGgttagttctttgtcacccaatttgtcgattttatttgcctttattattttgatttctattttttaggctgaattcatgtgatgcttcgggcaataaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaaa