1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGGATATATATCTGCTTGCACGAAAGTGGAGAGTGCTGCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaacatatcctttgctctattgacatcagctgttcacgaaaactttgcttacctgaagagctgactgtctgtag
species | Zea mays |
transcript | GRMZM2G121200_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTG GGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACGEST: gi|16926488|gb|BM079556.1|BM079556
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaaca ... ctgtctgtagGGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTG GGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACGEST: gi|211537569|gb|FL441998.1|FL441998
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaaca ... ctgtctgtagGGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTG GGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACGEST: gi|45846842|gb|CN070785.1|CN070785
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaaca ... ctgtctgtagGGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATGCAACTCTG GGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACG
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaaca ... ctgtctgtagGGACGTTTACACTATCCAATTTGGGTATGTTTGGGGTGGATAAATTCGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGATATATATCTGCTTGCACGAAAGTGGAGAGTGCTGCTCAAGAAGGCACGCATGAAGCAGCTGCAACCAAATGAATACAACTCTGgtatacaacatatcctttgctctattgacatcagctgttcacgaaaactttgcttacctgaagagctgactgtctgtag
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC