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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTGACCCAAGAACACGCATGGTTTTATTCAAGATGTTAAACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgtagctttaagataccatattatagtgcatattggaatgacttatattgtgtatcaagaaacataatagatacgcagctctttctgtagatagaagattg...

Basic information

species Zea mays
transcript GRMZM2G120329_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 3
GCTATTGACCCAAGAACACGCATGGTTTTATTCAAGATGTTAAACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgtagctttaag----------ataccatatt-atagtgcatattg--------gaatgacttatat-tgtgtatcaagaaacat------aatagatacgcag---------ctctttctgtagatagaagattg----------------------------------------------
|||||||| |||||||||||||||||| | ||||||||||||||||| || || ||||||| ||||||||| ||||||||||||||||||||||||  |||             ||| | |||| | | ||| |  ||         | | ||||   | |||| || |  || |||      |||| ||||  ||         || |  ||||| | | |||||                                                
GCTATTGATCCAAGAACACGCATGGTTCTGTTCAAGATGTTAAACCGGGGGGTTTTTAATACCATAAATGGGTGCATTTCTACAGGGAAAGAGgtatttttttagttcaactgcatatcttattgacattgctttctgctatttgcaatttactttcgtatgtggataagaaagcatgttgagaatatatacatagtatagagcactttagctgtatacaaaagatacagaatctggcctggactgcaagtgcaattttcttttctctatgcag

upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 3
GCTATTGACCCAAGAACACGCATGGTTTTATTCAAGATGTTAAACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgta--------gctttaagataccatattatagtgcatattgg-aatgact-tatattgtgtatcaagaaacata------atagatacgcagctctttctgtagatagaagattg-----------
|| ||||| || ||||| |||||||| |||||||||||| | ||| | ||||||||| || | || ||||| |||||||| || || || || |||         | | ||| |    | |    ||   | ||    ||||    ||  | || ||||   |  |||      ||  | || |  |  ||    |   ||     |||           
GCAATTGATCCTAGAACGCGCATGGTCTTATTCAAGATGCTGAACAGAGGTGTCTTTCATGATATCAATGGATGCATTTCAACTGGAAAGGAAgtatgtgatccacctgaagcttttgtttacctgtttgtttttatgatgatgacatggtttggatcatcgactatatgtgatatcaagacaccacatttctgtttcttactgtgttgttttctaacag

upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 3
GCTATTGACCCAAGAACACGCATGGTTTTATTCAAGATGTTAAACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgta--------gctttaagataccatattatagtgcatattgg-aatgact-tatattgtgtatcaagaaacata------atagatacgcagctctttctgtagatagaagattg-----------
|| ||||| || ||||| |||||||||||||| |||||| | ||| | ||||||||| || | || ||||| |||||||| || || || || |||         ||| ||| |    | |    ||   | ||    ||||    ||  | || ||||   |  |||      ||  | || |  |  || |  |   ||     |||           
GCAATTGATCCTAGAACTCGCATGGTTTTATTTAAGATGCTGAACAGAGGTGTCTTTCATGATATCAATGGATGCATTTCAACTGGAAAGGAAgtatgtgatacacttgaagcttttgtttacctgtttgtttttatgatgatgacatggtttggatcatcgactatatgtgatatcaagacaccacatttccgtttcttactttgttgttttctaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78115075|gb|DV533463.1|DV533463
EST:     ACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAG                         GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAA-
genomic: ACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgtagctttaa ... ctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAA
EST: gi|149097280|gb|EE183103.2|EE183103
EST:     CCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGGAAAGAG                         -CAAATGTCTATCATGGCA-CAAAGACGGATGGCCAGGAGCTTGCAATTA
genomic: CCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGG-AAAGAGgtagctttaa ... ctatgggcagGCAAATGTCTATCATG-CAACAAAGACGGATGGCCAGGAGCTTGCAATTA