1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTAGCAGAGGACTTGGTCTCACAGCACATATTATTGATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcag
species | Zea mays |
transcript | GRMZM2G119791_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCEST: gi|211356321|gb|FL081349.1|FL081349
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCEST: gi|211356320|gb|FL081348.1|FL081348
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCEST: gi|78082688|gb|DV511091.1|DV511091
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: ATCACTGCAAGCTGGTCCTTAACTTTCCTGAAGGGACCAACAGCACCTGG TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGCAGAGGACTTGGTCTCACAGCACATATTATTGATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcag
- - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG