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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGTGTCATGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaagggggaaaacactactctaatgtggcttgcag

Basic information

species Zea mays
transcript GRMZM2G119725_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119725_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 3
AAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGTGTCATGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaaggggg---aaaacactactctaatgtggcttgcag
|||||| |||||||| ||| |||||||||| ||||||||||| ||||| ||| |||| ||| |||||||| | |||||||||||||| || ||||||||||| || |    |  |||| ||||||||||||     |||| || ||  |||||  ||         |    ||||  || ||    | ||||
AAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGTGTTATGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148930418|gb|EE284901.2|EE284901
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|149108358|gb|EE292696.2|EE292696
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211020902|gb|FL324490.1|FL324490
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|76930436|gb|DV172388.1|DV172388
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|148937093|gb|EC881269.2|EC881269
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211457499|gb|FL333172.1|FL333172
EST:     GCTGGGTTACTTGGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: GCTGGGTTACCTG-TTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211404454|gb|FL338957.1|FL338957
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211017912|gb|FL318017.1|FL318017
EST:     TGCTGGGTTAC-TGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCG
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCG
EST: gi|148961302|gb|EE012027.2|EE012027
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211220721|gb|FL343735.1|FL343735
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211391716|gb|FL351031.1|FL351031
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211354854|gb|FL354353.1|FL354353
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGA
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGA
EST: gi|211107153|gb|FL361596.1|FL361596
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|211160210|gb|FL316342.1|FL316342
EST:     GCTGGGTTACCTGTTTGGGATCTCCTTTCCTACAGTNCA-CATAACCAAG                         CTTCACTTTCCTTCGAGTATCATCTCTTATATCGAAGATAGGGACTCTGGC
genomic: GCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGT-CAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
EST: gi|149104738|gb|EE290190.2|EE290190
EST:     TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG                         CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC