1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTGGGCCCCGCCCGACCCCTGTCCGGAGGCGGAGCCCTGCCCAACAAAGACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTGgtaagggctgtgctgtgctcacttcgccttcccctcatgatatgattttgctctcttcttctaactggaaaaaagtggcactggatgcag
species | Zea mays |
transcript | GRMZM2G119426_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTG TTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACATEST: gi|30088085|gb|CB886290.1|CB886290
genomic: GACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTGgtaagggctg ... ctggatgcagTTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACAT
EST: CTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTG TTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACATEST: gi|148970673|gb|EE021384.2|EE021384
genomic: CTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTGgtaagggctg ... ctggatgcagTTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACAT
EST: GACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTG TTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACAT
genomic: GACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTGgtaagggctg ... ctggatgcagTTAATTTCAACCGCCATGATGCATCCACCACGCTTCAGAGCGCAGCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGGCCCCGCCCGACCCCTGTCCGGAGGCGGAGCCCTGCCCAACAAAGACCACACTACTCGCTGTAGAAACTACAGTGGCTGCTGCTTCAGCAGCTGgtaagggctgtgctgtgctcacttcgccttcccctcatgatatgattttgctctcttcttctaactggaaaaaagtggcactggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG