Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcag

Basic information

species Zea mays
transcript GRMZM2G119169_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctg-taatgttatgctaattatgtgagtttctctgctgcag---------------
 |||||||||    | ||||| ||||| || ||||||||||| |||||||| ||||  ||||| |||||  | || ||||| |||||||| ||||||||||| |     |    | |     |  ||  |   ||| | | || | || ||| |  || | | | |||       ||   |               
CCAGGCTAAGAGCAGACACTCCAATGGTCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATCCTAGATTTGCTGAAGAACGCTGAGAGTAATGCTGAGgtatgtg--tcctgtatatgcatttgatttgatttttcatatgattattttaagtcaactttctaagtaataaaacttttgattgctttaacacag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G10910.2 (Glycine max), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctgtaatgtta------tgctaatta-------tgtgagtttctctgctgcag
 |||||||||  | | ||||| ||||| || ||||| ||||||||||| || || | ||||||||| ||  | ||||| |||||||||||||||||||| || |     ||||   |   | |      |   | ||  | | | |||  |      | | |||||       ||  | ||| |    | |||
CCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAgtatgtctatatatacttttttttgcttttccatatggctatttcatgccaactgtttccaaattaatttaactgaaatttttttcttttcag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctg-taatgttatgctaattatgtgagtttctctgctgcag-----------------
 |||||||||    | ||||| |||||||| ||||||||||| |||||||| ||||  |||||||||||  | || |||||||||||||| |||||||| || |     | ||    |    |  ||  |   ||| | | || | || ||| |  || | |   |||   | | ||   |                 
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtc-ctgtataagc---atttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: AT1G67430.2 (Arabidopsis thaliana), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttt-acaattatactgtccct--gtcagacctatctttgcttct----gtaatgttatgctaatta------tgtgagtttctctgctgcag-------
||| ||||||    | ||||| ||||| || ||||| ||||| | ||| ||||||   ||  |||| ||  | |||||||| ||||||||||||||||||||   || |  || |  |   |     | || | |  ||| ||||    |||   || ||||||| |      | ||| |||   || |   |       
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcaggtgaaagg

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaa----ttatgtgagtttctctgctg-cag
|||||| |||    | || || || || || || ||||||||||  |||||||||  |||| |||| || |||||||||||||||||||||||||||||||||     |   ||| |   |||      |  | | |    | || |    | ||||    || ||| |     |  | |  |||
TCAGGCAAAGAACAGGCATTCGAACGGACAAGGTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggttttacgactctttttgttttgt-tgccatggtgattttagttagttactaaaactttttgtaaaccatttggttatcag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttt-acaattatactgtccct--gtcagacctatctttgcttct----gtaatgttatgctaattatgtgagtttctctgctgcag------
||| ||||||    | ||||| ||||| || ||||| ||||| | ||| ||||||   ||  |||| ||  | |||||||| ||||||||||||||||||||   || |  || |  |   |     | || | |  ||| ||||    |||   || ||||||| | |    |||      || |       
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaat-aagcatattttgactttgaatgttcag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 5
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctgtaat-gttatgctaattatgtgagtttctctgctgcag--------------------------
|||||| |||    | || ||||||||||| ||||||||||||||||||||||||| || ||| |||||  | || |||||||| ||||| |||||||| || |  | ||    || || |  |       |||  ||||   | || |      |   ||  |   ||| | |  |||                            
TCAGGCAAAGAACAGGCATTCAAATGGGCAAGGACGCTGGCCTGTCAAATCTGCTAAATACATCCTAGATTTGCTTAAGAATGCCGAGAGTAATGCTGATgtatgta-tttcgttgcccttcaccatgtattctcggctttatttatagccccttttgatagatagctttatttattgcccttactaataaatgtcaattcttacag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g01520.t01 (Vitis vinifera), 5'ss of exon 5
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaa-----------ttatactgtccctgtcagacctatctttgctt-ctgtaatgttatgctaattatgtgagtttctctgctgcag
|||||| |||   || || || ||||| || ||||||||||||||||||||||| | ||| ||||| ||  | ||||||||||||||||||||||| || || |  |            || | ||||  || ||     |||| || ||| ||| |    | |  |  | ||||||   | | |    |||
TCAGGCAAAGAACCGCCATTCTAATGGACAAGGACGCTGGCCTGTCAAATCTGCAAAATTTATTCTGGATTTACTCAAGAATGCTGAGAGCAATGCAGATgtatgtacattttaactgtttgtcctgttactttctcctttatcattacttgctgaaccacttttattttgatgtgaacatttttttcccag

upper sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 3
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgctt---ctgtaatgttatgctaattatgtgagtttctctgctgcag
|||||| |||    | || || ||||| || ||||||||||||||||||||||||| |||||| |||||  | || |||||||||||||| |||||||| || |  | | | | || || |  |       ||| |||||   || ||||   |  |||| ||    |  |    |  | |||
TCAGGCAAAGAACAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattca-attgcccttcaccatgtattctctgctttgtctataattcca-actaactaataaatgtcaattcttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378381|gb|FL000676.1|FL000676
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTC
EST: gi|37390893|gb|CF632684.1|CF632684
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|5847620|gb|AW000699.1|AW000699
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|211378377|gb|FL000672.1|FL000672
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|9952004|gb|BE638587.1|BE638587
EST:     GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|60345876|gb|DN212849.1|DN212849
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|211381028|gb|FL000688.1|FL000688
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGT
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGT
EST: gi|30704734|gb|CD058588.1|CD058588
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|33097211|gb|CF057171.1|CF057171
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|50335900|gb|CO531026.1|CO531026
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|101386822|gb|EB815428.1|EB815428
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTCTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|30704742|gb|CD058589.1|CD058589
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|211381023|gb|FL000683.1|FL000683
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|5525695|gb|AI861588.1|AI861588
EST:     AGAGCAATGCTGAG                         GTAAAAGGTTTTGATGTCGATACCCTCTATGTGTCCCCCATTCAAGTG-AC
genomic: AGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|60349795|gb|DN216768.1|DN216768
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|213173920|gb|FM195799.1|FM195799
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|60356912|gb|DN223885.1|DN223885
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|29167874|gb|CB411134.1|CB411134
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCA
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCA
EST: gi|32945522|gb|CF050341.1|CF050341
EST:     TGCTAGATTCATTCTAGACCTTCTCATGA-TCGCTGGGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAT
genomic: TGCTAGATTCATTCTAGACCTTCTCAAGAAT-GCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|32934714|gb|CF039526.1|CF039526
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|29544312|gb|CB604692.1|CB604692
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|211140525|gb|FL058263.1|FL058263
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|67011073|gb|CO439822.1|CO439822
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: gi|211372347|gb|FL430779.1|FL430779
EST:     CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG                         GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 130

TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 122

TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 101

TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 60

TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG