Sequence
atgc intronic sequence ATGC exonic sequenceTTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTTTGAAGGTTCAAAAGAATGGAACAAGTGAGCATGTCCCACCTCCACGACCAAAGCGTAAAGCTGCTCATCCATACCCTCAAAAGGCCTCCAAAAATGgtagatcctcatatgctcataagttcagcacgcacccaacacatatatctttgata---------------ctaa--cagtacccccctctgcaca--aaacatttacttcaatatatattctc-atcttgcag
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G37520.1 (Glycine max), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgaga--cttcatatcctcagaaggcataaaaataa---caatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGTTCATCCATATCCTCAGAAAGCTTCAAAAAATGgttagaatcttcactatattttttgctacacaatttagtgcatttgtatctaataattgttagtgatatttggcag---------------------------------------------------------------
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgt-atatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTAAAAGTTCAGAAGAGTGGGACAAATGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTGgt-------tatagtct---------------tcactatattttttttttttgctacacaatttagtgcatttgtctc-taataattgttggtgagatttggcag------------------------------
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G24400.1 (Glycine max), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttcttttttagtcaatttaagtgcatttatatctgatattttataattgatatctggcag--------------------------------------------------------
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G29740.1 (Glycine max), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttattttttagacaacttaagtgcatttat--atctaattatttataattgac---atctggcag---------------------------------------------------
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G52660.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTTAAGGTACAAAAGAGTGGGACCGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAAGGCTCACAAGAATGgt---acgttatagctactgc---tttaaaaactttga--agttgtattgttgtt-tgc-ttactgaaaactatattgat--gcactgtt--tatggcaatgtgcag---------------------------
upper sequence: GRMZM2G118693_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 3
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcat-atcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
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TTTCTGAAGGTTCAGAAGAATGGAATAAATGAACATCTACCTCCCCCCCGGCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGgtgagaattgttcattttaagcattcctatacacaattctcatgtgaagatatcttata---tatgtcatatctggcag--------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33098516|gb|CF058476.1|CF058476EST: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATG AACCAAACTATGGTCTCAAGACAGATTCATCTTCCATACATAGGAACTCTG
genomic: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttc ... tgacttacagAACCAAACTATGGTCTCAAGACAGATTCATCTTCCATACATAGGAACTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTTGAAGGTTCAGAAAAATGGAACCAGTGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAGAATGgtgagacttcatatcctcagaaggcataaaaataacaatcatatctatccatgtcatgcgctgtggggcacctaattcaccagcaccgtttgtatatcaaatagttgctctaatgtcctctccctgacttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC