1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCGGCGATGATGGCCAGGGGGACGAGGACCCTAACCAGCGGCCAAACAAGAAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaatgacatgaacactcttcttcttcttccctagctagctttaagcaccatttaaattctattcatcaaggtcatgtctgaatgtttggatattttgaactgtggttgatcag
species | Zea mays |
transcript | GRMZM2G118063_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|89763730|gb|DY690808.1|DY690808
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGG CTTCTTCAAGGAGTGTCCCCACCCGGATGACAAGCAGCGAAAGGGAGCTGGEST: gi|78116714|gb|DV535101.1|DV535101
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGG-AGCTG-
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAGGGAGCTGAGEST: gi|50323259|gb|CO518385.1|CO518385
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|78087580|gb|DV515973.1|DV515973
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTNCA-GGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAEST: gi|148934302|gb|EC878328.2|EC878328
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTT-CAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGA
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|149100689|gb|EE186778.2|EE186778
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|148953688|gb|EC899049.2|EC899049
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|50335761|gb|CO530887.1|CO530887
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|149015319|gb|EE045135.2|EE045135
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|71299781|gb|DR785898.1|DR785898
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAGEST: gi|149102070|gb|EE287534.2|EE287534
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
EST: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGC CTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
genomic: AAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaa ... ggttgatcagCTTCTTCAAGGAGTGTCCACACCCGGATGACAAGCAGCGAAAGGAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCGATGATGGCCAGGGGGACGAGGACCCTAACCAGCGGCCAAACAAGAAGAAGCGGTATCACCGCCACACCCAGCACCAGATCGAAGAGATGGAGGCgtaaggacaatgacatgaacactcttcttcttcttccctagctagctttaagcaccatttaaattctattcatcaaggtcatgtctgaatgtttggatattttgaactgtggttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG