1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGACCGTCGCCATGACCGCGACCGGGATAGGGATTATGACCGCTCCCGCGGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctgaataataggcacacttttttatttgaaacccttgtgcctcacatcgttgactgacccaggtatttgtttatgatttcag
species | Zea mays |
transcript | GRMZM2G118014_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|211519312|gb|FL433830.1|FL433830
genomic: GAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|24767722|gb|CA402862.1|CA402862
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|76286406|gb|DV025974.1|DV025974
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|161588478|gb|EY959060.1|EY959060
genomic: GAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGEST: gi|60349387|gb|DN216360.1|DN216360
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|149086754|gb|EE176294.2|EE176294
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTGEST: gi|211168469|gb|FK981061.1|FK981061
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
EST: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
genomic: GGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... atgatttcagGCGCCATGAGAGATACTAAATGTTACTCCATGGCTGACAGATTTTGGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACCGTCGCCATGACCGCGACCGGGATAGGGATTATGACCGCTCCCGCGGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctgaataataggcacacttttttatttgaaacccttgtgcctcacatcgttgactgacccaggtatttgtttatgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA