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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataaatttgacttaagtcgtcgcgcacaccaaacatgagtttttttttgggtgtttactaccgctgatacatcttcggttgtgtag

Basic information

species Zea mays
transcript GRMZM2G118003_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 5'ss of exon 3
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataaatttgacttaagtcgtcgcgc---------acaccaaacatgagtttttttt-tgggtgtttactaccgctga---tacatcttcggt-tgtgtag
||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |  | | | ||||| |  | || ||           | |||   ||| | |||||||  ||    |||  ||| ||  |   | |  ||| ||| |   |||
GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacat-tgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag

upper sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 5'ss of exon 3
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataaatttgacttaagtcgtcgcgc---------acaccaaacatgagtttttttt-tgggtgtttactaccgctga---tacatcttcggt-tgtgtag
    | ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |  | | | ||||| |  | || ||           | |||   ||| | |||||||  ||    |||  ||| ||  |   | |  ||| ||| |   |||
----ATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAGgtacat-tgagtctgactcagattgtagcatgttgccctgataccctgcatcattttttttaatgacaatttgttactgccaaatatgcgcctttggtgtacctag

upper sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 3
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaa---aaataaatttgacttaagtcgtcgcgcacaccaaacatgagtttttttttgggtgtttactaccgctgatacatcttcggttgtgtag
|||||  | |||||||||   ||  |||| |||||||||||||||||||||||||| |||||||| || || ||  ||||   ||  | |||||  |||     | |  || |  || | | |     ||  |           |   ||||    ||  |  |  |  ||
GAAGATATAGATCTCATGGCCAGCCTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaacaatatttgttttacacatttggccataataa-cttaatcaaattgctaaactcccttaataactga-gtttcaccactcctacag

upper sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 3
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaa---aaataaatttgacttaagtcgtcgcgcacaccaaacatgagtttttttttgggtgtttactaccgctgatacatcttcggttgtgtag
|||||  | |||||||||   || ||||| |||||||||||||||||||||||||| |||||||| || || ||  ||||   ||    |||||  |||  |  | |  || |  || | |||     ||  |   |       |   ||||    ||  |  |  || ||
GAAGATATAGATCTCATGGCCAGCTTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaacagtatttgttttacatatttggtcataataa-cttgatcaaattgctaatttcccttaataactga-gtttcaccactactgcag

upper sequence: GRMZM2G118003_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g02680.t01 (Vitis vinifera), 5'ss of exon 3
GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataaatttgacttaagtcgtcgcgcacaccaaacatgagtttttttttgggtgtttactaccgctgatacatcttcggttgtgtag
|||||  | || || ||||| ||| | || ||||| || ||||| ||||||||||||||||||||||| ||||| ||| |    ||  | || ||     |  |   | |  ||  ||      |  ||         |  |   || |    | ||  | ||     
GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAGgtgatttcaagatggattt----tgcagaaaataataattatag----taattaaaaaaaaaaaaaaaactaaactctgttttgatgcag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22546685|gb|BU098996.1|BU098996
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGG-GTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|87157163|gb|DY401952.1|DY401952
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195344|gb|FK979452.1|FK979452
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32848755|gb|CD988436.1|CD988436
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         G
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtag-
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         G
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtag-
EST: gi|32928641|gb|CF033453.1|CF033453
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|6826935|gb|AW330578.1|AW330578
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGCCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195347|gb|FK979455.1|FK979455
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGMAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTT
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTT
EST: gi|109179241|gb|EC379886.1|EC379886
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192948|gb|FK979444.1|FK979444
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192942|gb|FK979438.1|FK979438
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|60397967|gb|DN230783.1|DN230783
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195341|gb|FK979449.1|FK979449
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192947|gb|FK979443.1|FK979443
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGRGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211190538|gb|FK979424.1|FK979424
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|148934074|gb|EC878088.2|EC878088
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|149096066|gb|EE181748.2|EE181748
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|67024539|gb|CO453288.1|CO453288
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGTGAAGGGAAAATCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211197749|gb|FK979464.1|FK979464
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCANGAAG-TGTAGCGTATTACAATAATTTG
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCA-GAAGGTGTAGCGTATTACAATAATTTG
EST: gi|31910377|gb|CD651393.1|CD651393
EST:     GAACTTCGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|71331060|gb|DR802360.1|DR802360
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211190545|gb|FK979431.1|FK979431
EST:     AACTTTGATGCCTACCGGTTTCTCA-TCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAAGGGAA-GTCAATTCACGAAGGTGTAGCGGTATTACAATAATT
genomic: AACTTTGATGCCTACCGGTT-CTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAA-GGGAAAGTCAATCCA-GAAGGTGTAGCG-TATTACAATAATT
EST: gi|148969028|gb|EE019736.2|EE019736
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929351|gb|CF034163.1|CF034163
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195351|gb|FK979459.1|FK979459
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211322184|gb|FK979481.1|FK979481
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|22472597|gb|BU037077.1|BU037077
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211322188|gb|FK979485.1|FK979485
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195352|gb|FK979460.1|FK979460
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192936|gb|FK979432.1|FK979432
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929206|gb|CF034018.1|CF034018
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|148931885|gb|EC877350.2|EC877350
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|21760120|gb|BQ635661.1|BQ635661
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|148931067|gb|EC873678.2|EC873678
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32928537|gb|CF033349.1|CF033349
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211190539|gb|FK979425.1|FK979425
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|6564100|gb|AW231722.1|AW231722
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|31353887|gb|CD438244.1|CD438244
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|21390100|gb|BQ528149.1|BQ528149
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192950|gb|FK979446.1|FK979446
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|6636984|gb|AW261256.1|AW261256
EST:     CTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: CTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211195346|gb|FK979454.1|FK979454
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|211192937|gb|FK979433.1|FK979433
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCCG                         ATGGGCGAAGG-AAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTG
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGG-CGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTG
EST: gi|28909524|gb|CB330973.1|CB330973
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929111|gb|CF033923.1|CF033923
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32848750|gb|CD988431.1|CD988431
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32837200|gb|CD976878.1|CD976878
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|148996928|gb|EE035737.2|EE035737
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|67018030|gb|CO446779.1|CO446779
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGTGAAGGGAAAATCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929433|gb|CF034245.1|CF034245
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGATCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929642|gb|CF034454.1|CF034454
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTCCAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32928848|gb|CF033660.1|CF033660
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32847307|gb|CD986988.1|CD986988
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32837471|gb|CD977149.1|CD977149
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|32929091|gb|CF033903.1|CF033903
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAAGGTGTAGCGTATTACAATAATTTG
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAG-AAGGTGTAGCGTATTACAATAATTTG
EST: gi|32849499|gb|CD989180.1|CD989180
EST:     GAACTTTGATGCCTACCGGTTCCCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|26558653|gb|CA830888.1|CA830888
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGG
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTT-G
EST: gi|32928412|gb|CF033224.1|CF033224
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
EST: gi|101393334|gb|EB818598.1|EB818598
EST:     GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG                         ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA
genomic: GAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 32 (upstream exon), 15 (downstream exon)
Score: 3

GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG


Block sizes: 49 (upstream exon), 26 (downstream exon)
Score: 3

GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG


Block sizes: 32 (upstream exon), 15 (downstream exon)
Score: 1

GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGgtaaaaataa ... ggttgtgtagATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG