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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacccacaatttttgacagattcatttgtaggcatggtgtatctgtgatttccttggtgtgcatggaggtaaatcacattcacatgccgaatga...

Basic information

species Zea mays
transcript GRMZM2G117544_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 3
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaa-acccacaatttttgacagattcatttgtaggcatggtg-tatctgtgatttccttggtgtgcatggaggtaaatcacattcacatgccgaatga
|||||||||||||||||||  |||||||||||| |||||||||||||||||||||| |  | || || ||||| || || || |||||||| ||||| |||| | ||  | ||| |    ||   ||   || ||  |  ||| || |    | | | |   |     |       ||||     | |   | |    ||  
GGCTGGTGTTCAGGCACAAACTGTACCAGCTGAGGGAGGAGAGGGACATGAAGCCCCAGGCATTCGCTAGCCTCGTCTCCGCGCTCCTCTACGAGAAGAGgttagaatgctcactagccctgtttgaag-atatgatgatatgatgatgatcgcgttctaagtaactggttcatgtgtaagatg-agtaggaagtaatattt

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaaccca---caatttttgac-agattcatttgtaggcatggtgtatctgtgatttc-cttggtgtgcatggaggtaaatcacattcacatgccgaatga
| ||  | ||| | ||||| ||||| |||||    || |||||||||||||||||| |||||||||||||||| || || ||  | ||||| ||||||||||  | || | |   |  |||  ||  |    | ||| |||  |      ||   | |||    ||  |     |  |     |  ||||||   |||       
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctattttatcactctaaaaactgaatacattcttttgcatttcag

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacccacaatttttga--cagattcatt-tgtagg----catggt--gtatctgtgatttc-cttggtgtgcatggaggtaaatcacattcacatgccgaatga
| ||  | ||| | ||||| ||||| |||||    || |||||||||||||||||| |||| ||||||||||| || || ||  | ||||| ||||| ||||  ||| |       ||| |    ||  | ||| |||  |     || |    |||     |||    ||  |||   |  |   |||| ||| |    ||||      
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 3
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacccacaatttttgacagattcatttgtaggcatggtgtatctgtgatttccttggtgtgcatggaggtaaatcacattcacatgccgaatga--------
|||| || ||  |||||||  |||| |||||    ||||||||||| |||||||||||||||||||| |||||||| || || || || ||||||||||||| ||   |  |   ||  |||    ||  ||| |   |||  | | | | || ||    |  ||   |||||  ||     ||  ||  ||| |  |          
GGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgctta---ttactgaagtttttgtttat---catattttttttctgtttggaattttg-aaatggacttattatgcaa-catttgctggtttttctttttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211037010|gb|FL157523.1|FL157523
EST:     AAGCCCGAAGCCTT-GCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034558|gb|FL157504.1|FL157504
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034566|gb|FL157512.1|FL157512
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|89247888|gb|DY619674.1|DY619674
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211039454|gb|FL157534.1|FL157534
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|60356716|gb|DN223689.1|DN223689
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|71429028|gb|DR810078.1|DR810078
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|148995894|gb|EE035134.2|EE035134
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211032115|gb|FL157499.1|FL157499
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034554|gb|FL157500.1|FL157500
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211037006|gb|FL157519.1|FL157519
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|76288304|gb|DV027872.1|DV027872
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|76288303|gb|DV027871.1|DV027871
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|37379861|gb|CF626698.1|CF626698
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|89758446|gb|DY687621.1|DY687621
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|71429029|gb|DR810079.1|DR810079
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034565|gb|FL157511.1|FL157511
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCKTAGGAGACAACG
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCC-TAGGAGACAACG
EST: gi|60395143|gb|DN228012.1|DN228012
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|88754192|gb|DY538333.1|DY538333
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGTTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034561|gb|FL157507.1|FL157507
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|60398269|gb|DN231085.1|DN231085
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211037004|gb|FL157517.1|FL157517
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211037002|gb|FL157515.1|FL157515
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211037003|gb|FL157516.1|FL157516
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034555|gb|FL157501.1|FL157501
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTYTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034559|gb|FL157505.1|FL157505
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGC
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGC
EST: gi|148987000|gb|EE030820.2|EE030820
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211032114|gb|FL157498.1|FL157498
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211039452|gb|FL157532.1|FL157532
EST:     AATCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211032113|gb|FL157497.1|FL157497
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|67012342|gb|CO441091.1|CO441091
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|89247887|gb|DY619673.1|DY619673
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211032111|gb|FL157495.1|FL157495
EST:     AAGCCCGAARCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCAT
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCAT
EST: gi|211034567|gb|FL157513.1|FL157513
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211037015|gb|FL157528.1|FL157528
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCT
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCT
EST: gi|211034560|gb|FL157506.1|FL157506
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCC
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCC
EST: gi|211263410|gb|FL474910.1|FL474910
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|60337320|gb|DN204293.1|DN204293
EST:     AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: gi|211034557|gb|FL157503.1|FL157503
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GGTTTGGACCATACTTCTGCCAACCAGTTATTG
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagG-TTTGGACCATACTTCTGCCAACCAGTTATTG
EST: gi|211037011|gb|FL157524.1|FL157524
EST:     AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG                         GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacccacaatttttgacagattcatttgtaggcatggtgtatctgtgatttccttggtgtgcatggaggtaaatcacattcacatgccgaatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC