1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacag
species | Zea mays |
transcript | GRMZM2G117388_T03 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211342720|gb|FL460317.1|FL460317
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|161590672|gb|EY958674.1|EY958674
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: CGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211265389|gb|FL116395.1|FL116395
genomic: CGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|7135572|gb|AW498154.1|AW498154
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GG- ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211211596|gb|FL477379.1|FL477379
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: AAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|7135238|gb|AW497985.1|AW497985
genomic: AAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GG- ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|166531613|gb|EG309021.1|EG309021
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG-T ACATAAGATTGTTGCEST: gi|60397359|gb|DN230175.1|DN230175
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGC
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT