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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag

Basic information

species Zea mays
transcript GRMZM2G116658_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g35760.1 (Oryza sativa), 5'ss of exon 3
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag
 || || |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | |||  |  |  || |  | ||  |   |   |      ||   ||  | |   |  |     ||   |   | |||| | || ||  || | || ||| ||   ||
ACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAGATGAAGgtttcg-cttgct--gttgcacagatcaatccatgatgatgtttgattcttctcgtgttcgtttgatcatgattttgaatttttttttggttcgattt-gtggtggtggcgag

upper sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g35760.2 (Oryza sativa), 5'ss of exon 3
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccag-ccacagtca-accagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag
 || || |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | |||  |  |  || |  | ||  |||   | |     ||    | ||| |    |  |  | ||  |    |   |||| ||  |     | | || |||  ||||||
ACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAGATGAAGgtttcg-cttgct--gttgcacagatcaatccatgatgatgtttgattcttctcgtgttcgtttgatcatgattttgaatttttttttggttcgatttgtggtggtggcgagcag

upper sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34024 (Selaginella moellendorffii), 5'ss of exon 2
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag
 || |||||||| |||||  |   |||||| |||  |  |||    || |||   || || |||||||||||||||||||| |||||||||||| | |||||  |        | | ||| | ||          |   |    |   |||   |    | | |   |||                                           
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagga-------tagaagctccaaaagcttttctttggcgtttctgatgtaaagatcttccttgtctgtccag---------------------------------------

upper sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag
 || |||||||| |||||  |   |||||| |||  |  |||    || |||   || || |||||||||||||||||||| |||||||||||| | |||||  |        | | ||| | ||          |   |    |    ||   |    | | | | |||                                           
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagga-------tagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78081944|gb|DV510356.1|DV510356
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76913686|gb|DV165223.1|DV165223
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|74239640|gb|DT647554.1|DT647554
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|50324567|gb|CO519693.1|CO519693
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|74240987|gb|DT648901.1|DT648901
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71767034|gb|DR964971.1|DR964971
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149108009|gb|EE292364.2|EE292364
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|91877000|gb|EB406957.1|EB406957
EST:     AGAGCCGCCGGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149107365|gb|EE189243.2|EE189243
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|84969616|gb|DT652022.2|DT652022
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149075614|gb|EE164152.2|EE164152
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148955640|gb|EC901309.2|EC901309
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149095883|gb|EE181543.2|EE181543
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71774500|gb|DR972378.1|DR972378
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71422373|gb|DR805707.1|DR805707
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71761496|gb|DR959433.1|DR959433
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149086823|gb|EE176369.2|EE176369
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|88746181|gb|DY530322.1|DY530322
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|93281129|gb|EB673393.1|EB673393
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|91052677|gb|EB163095.1|EB163095
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149072236|gb|EE160486.2|EE160486
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148941557|gb|EC886493.2|EC886493
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71767645|gb|DR965582.1|DR965582
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|78086118|gb|DV514511.1|DV514511
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76287426|gb|DV026994.1|DV026994
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|78115150|gb|DV533538.1|DV533538
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71440277|gb|DR821327.1|DR821327
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|93015238|gb|EB640758.1|EB640758
EST:     GAGCCGCCAGGTCAAGTTC-GGTTCCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: GAGCCGCCAGGTCAAGTTCTGGTT-CCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|86465791|gb|DY232164.1|DY232164
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71771318|gb|DR969255.1|DR969255
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|93283652|gb|EB675916.1|EB675916
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|101389758|gb|EB816813.1|EB816813
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|91878869|gb|EB408826.1|EB408826
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71769291|gb|DR967228.1|DR967228
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148954064|gb|EC899463.2|EC899463
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71450348|gb|DR831398.1|DR831398
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71433203|gb|DR814253.1|DR814253
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71432526|gb|DR813576.1|DR813576
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76014434|gb|DT941604.1|DT941604
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76289817|gb|DV029385.1|DV029385
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71319101|gb|DR796312.1|DR796312
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148950107|gb|EC895643.2|EC895643
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|74232260|gb|DT640174.1|DT640174
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149007374|gb|EE040227.2|EE040227
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|89757984|gb|DY687335.1|DY687335
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71765333|gb|DR963270.1|DR963270
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|50325582|gb|CO520708.1|CO520708
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149099741|gb|EE185794.2|EE185794
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148959963|gb|EE153202.2|EE153202
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|37423407|gb|CF649431.1|CF649431
EST:     CGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: CGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149027254|gb|EE046451.2|EE046451
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71310437|gb|DR791524.1|DR791524
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148965442|gb|EE016248.2|EE016248
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|148962577|gb|EE013455.2|EE013455
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76925139|gb|DV170299.1|DV170299
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|78110554|gb|DV528964.1|DV528964
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149206953|gb|ES702549.1|ES702549
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|50339536|gb|CO534662.1|CO534662
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71306808|gb|DR789559.1|DR789559
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76932851|gb|DV173203.1|DV173203
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|76284890|gb|DV024458.1|DV024458
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|149108578|gb|EE189722.2|EE189722
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71422948|gb|DR805902.1|DR805902
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|71326764|gb|DR800043.1|DR800043
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|74236620|gb|DT644534.1|DT644534
EST:     CCAGGTCAAGTTCGGGTTCCAGAACCGCCGCACGCGGAGGAAG                         AGGCAGATCGAGCGGCACGAGGAACGCGCTGCTGAGGCAGGAGAACGACAA
genomic: CCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGA-GAACGCGCTGCTGAGGCAGGAGAACGACAA
EST: gi|78106731|gb|DV525149.1|DV525149
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
EST: gi|93015636|gb|EB641156.1|EB641156
EST:     AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAG                         ACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG
genomic: AGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggactt ... tgatgagcagACGCAGATCGAGCGGCACGAGAACGCGCTGCTGAGGCAGGAGAACGACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG