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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATGGGATCAAGCTCACTAAAGTACCCAGGGCAGCCACAGGAAATTCCTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaatgagttattacttatatgcatttttactttttctgatacattagatgcctcatatcctggttatatttaactgtaacttggccagatttcaacatgtaaatttattttggtgggtaggaaattgatctttttgttaatgtatacatcatctttctcttgcag

Basic information

species Zea mays
transcript GRMZM2G116204_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116204_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
CTTGATGGGATCAAGCTCACTAAAGTACCCAGGGCAGCCACAGGAAATTCCTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaatgagttattacttatatgcatttt--tactttttctgatacatt-agatgcctcatatcctggttatatttaactgtaacttggccagatttcaacatgtaaatttattttggtgggtaggaaattgatctttttgttaatgtatacatcatctttctcttgcag
|||  |||||||||||||| | |||||||| || ||||| ||||| || ||| |||||||||| | ||||||| | ||||||||||||||||| |||||||||||  |  |  | | ||| ||   ||   | |   | ||     ||    || |  | | | || |   | || | | |  | |                                                                                         
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgtgcaatttacatcgaagtgtttaattacattatgtttcgattttttatcgcag-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522617|gb|FL101850.1|FL101850
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211437737|gb|FL101814.1|FL101814
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGA
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGA
EST: gi|211528629|gb|FL101884.1|FL101884
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGGAATTCTGACGAGCACGAAGATTTGCAAGGTTCTTGKGATCATAT
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGG-AATTCTGACGAGCACGAAGATTTGCAAG-TTCTTGTGATCATAT
EST: gi|8516405|gb|BE123131.1|BE123131
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTTTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCAT
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCAT
EST: gi|211531634|gb|FL101902.1|FL101902
EST:     TTCTTTCAGAATACCACATTTTCCAATCCCCTGTAATTGATCCACACCAG                         GGTTGGGATTTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATC
genomic: TTCTTTCAGAATACCACATTTTC-AATCCC-TGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATT-CTGACGAGCACGAAGATTTGCAAGTTCTTGTGATC
EST: gi|211522625|gb|FL101858.1|FL101858
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAA
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAA
EST: gi|211537637|gb|FL101922.1|FL101922
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGKGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|29130566|gb|CB381270.1|CB381270
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGC
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGC
EST: gi|211534628|gb|FL101908.1|FL101908
EST:     TTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAAG                         GTTTGGAATTCTGACGAGCACGA
genomic: TTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCA-Ggtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGA
EST: gi|24774056|gb|CA409310.1|CA409310
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATTTCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|71775267|gb|DR973145.1|DR973145
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211531626|gb|FL101894.1|FL101894
EST:     CTTTCTTTCAGAA-ACCACATTTTCAATCCCTGTAA-TGATCCACACCAG                         GTTTGGGATTCTGACGAGCACGAAGATTTGCAGGGTCTTGGGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211528630|gb|FL101885.1|FL101885
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGC
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGC
EST: gi|15100471|gb|BI396262.1|BI396262
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|14717723|gb|BI245373.1|BI245373
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACCAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211522612|gb|FL101845.1|FL101845
EST:     TTTCTTTCAGAATACCCACATTTTCA-TCCCTGTAAATGATCCACACCAG                         GTTTTGGAATTCTGACGAGCACGAAGATTTGNNCA-GT-CTTGTGATCATA
genomic: TTTCTTTCAGAATACC-ACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTT-GGAATTCTGACGAGCACGAAGATTTG--CAAGTTCTTGTGATCATA
EST: gi|211522611|gb|FL101844.1|FL101844
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAG
EST: gi|211519602|gb|FL101834.1|FL101834
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCANACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGC
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGC
EST: gi|15427248|gb|BI543070.1|BI543070
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211522614|gb|FL101847.1|FL101847
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTCGGAATTCTGACGAGCA
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCA
EST: gi|211525622|gb|FL101863.1|FL101863
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211519598|gb|FL101830.1|FL101830
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTWAATGATCCACACCAG                         GTTTGGAATTCTGACGA
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGA
EST: gi|22936024|gb|BU572299.1|BU572299
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATTTCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211525632|gb|FL101873.1|FL101873
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGKAAATGATCCACACCAG                         GTTTGGGADTTCTGACGAGCACGAAGATTTGCAAGT
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAA-TTCTGACGAGCACGAAGATTTGCAAGT
EST: gi|28931186|gb|CB334547.1|CB334547
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|24774132|gb|CA409386.1|CA409386
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATTTCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|14883533|gb|BI273401.1|BI273401
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTT
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTT
EST: gi|211537638|gb|FL101923.1|FL101923
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATC
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATC
EST: gi|24773715|gb|CA408969.1|CA408969
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAACGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATTTCG
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCG
EST: gi|211522616|gb|FL101849.1|FL101849
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGACGAGCACGAAGATTTGC
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGACGAGCACGAAGATTTGC
EST: gi|211435151|gb|FL101811.1|FL101811
EST:     CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAG                         GTTTGGAATTCTGA
genomic: CTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaa ... tctcttgcagGTTTGGAATTCTGA