1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACACGGCGGAGTGTGCTGCTGCCGGGCAGGAGGCCGCCAAGGGCCTGCAGCCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtatttagcagtaaataacactacagtggtttactagtagaggactactggtcaaccatcatatcgcgcgcggtcccgttgcctggtgatgtgcttgtgtgctttgcgttattgcag
species | Zea mays |
transcript | GRMZM2G116185_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTGAGCTCTTCTTCA-GATGTCCCACGACATCTACAACTACGGTGAAGG GGTGATAGGGGAAGTGGCAGCCGATCACAGCCACAAEST: gi|20803186|gb|BQ294236.1|BQ294236
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGAEST: gi|148953903|gb|EC899284.2|EC899284
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCCGACCACAGTCACAAGTGGGTGTTCCAGGAEST: gi|91049965|gb|EB160383.1|EB160383
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCEST: gi|89250173|gb|DY621959.1|DY621959
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGC
EST: CTGAGCTTTTCTTCAAGATGTCCCACGACATCTACAATTACGG-GAAGGG GTTGATAGGGAAAGTGGCACCCGACCACACCCACAAGTGGGTGTTCCAAGEST: gi|26456486|gb|CA828069.1|CA828069
genomic: CTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAA-GGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCC-AG
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGAEST: gi|93012864|gb|EB638384.1|EB638384
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GGTGATAGGGAEST: gi|50336651|gb|CO531777.1|CO531777
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGAEST: gi|78112591|gb|DV530985.1|DV530985
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
EST: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGG GTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
genomic: CCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtattt ... gttattgcagGTTGATAGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACGGCGGAGTGTGCTGCTGCCGGGCAGGAGGCCGCCAAGGGCCTGCAGCCTGAGCTCTTCTTCAAGATGTCCCACGACATCTACAACTACGGTGAAGGgtacgtatttagcagtaaataacactacagtggtttactagtagaggactactggtcaaccatcatatcgcgcgcggtcccgttgcctggtgatgtgcttgtgtgctttgcgttattgcag
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