1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttgaatatagtatattcatctctagtagcttagtagaagtatctcttgttaatgcttaccaaggatgtaaacttgaactattgaag
species | Zea mays |
transcript | GRMZM2G115518_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTEST: gi|32830719|gb|CD970397.1|CD970397
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTEST: gi|31356504|gb|CD440861.1|CD440861
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGT
EST: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTEST: gi|211371493|gb|FL287192.1|FL287192
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTEST: gi|6760508|gb|AW324597.1|AW324597
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttgaatatagtatattcatctctagtagcttagtagaagtatctcttgttaatgcttaccaaggatgtaaacttgaactattgaag
- - - - - GGTGGA
- - - - - GTGGAG
- - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - AGCAAG