1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagttttttttatcacatacctatagtttcacaagacaaccagccgcctaactccatgattctccttttatggctgacgctgaatatttgatgaatacgcag
species | Zea mays |
transcript | GRMZM2G115424_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|60400143|gb|DN232950.1|DN232950
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|211157431|gb|FL453590.1|FL453590
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|7227633|gb|AW566274.1|AW566274
genomic: AGAAAAAACTCCTAAAAGCAGCAACAAGACTAAC-AAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|60342995|gb|DN209968.1|DN209968
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|87153397|gb|DY398186.1|DY398186
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCNTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CTTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|76018651|gb|DT945821.1|DT945821
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|37386070|gb|CF630209.1|CF630209
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|60343251|gb|DN210224.1|DN210224
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|18964582|gb|BM661089.1|BM661089
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|19821822|gb|BQ047846.1|BQ047846
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|149088113|gb|EE287286.2|EE287286
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|29129876|gb|CB380580.1|CB380580
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|32857894|gb|CD997575.1|CD997575
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|74232054|gb|DT639968.1|DT639968
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|31406448|gb|CD485180.1|CD485180
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|17921531|gb|BM259182.1|BM259182
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|17921939|gb|BM259590.1|BM259590
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|17921859|gb|BM259510.1|BM259510
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|22490368|gb|BU050291.1|BU050291
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: TAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCNCCTCCAEST: gi|5108057|gb|AI739770.1|AI739770
genomic: TAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|60355339|gb|DN222312.1|DN222312
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|31353558|gb|CD437915.1|CD437915
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|76935014|gb|DV174135.1|DV174135
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAEST: gi|22542674|gb|BU093112.1|BU093112
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: CTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCAEST: gi|78544653|gb|DV622151.1|DV622151
genomic: CTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
EST: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAG CCTTCACGCCAGGTAGAACCCAACTCAAGGGTCCCAAAGATGCCACCTCCA
genomic: AAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagtt ... gaatacgcagCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGgtatatagttttttttatcacatacctatagtttcacaagacaaccagccgcctaactccatgattctccttttatggctgacgctgaatatttgatgaatacgcag
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