Sequence
atgc intronic sequence ATGC exonic sequenceTTGTTCAAGAAACCTGGATGGATCCTGCCATAGGCCTCACACCTTATGATGTCCATAAGCATGTTGGGTTTCTCAAGCATCTGATGATAAGAACTGGAAGgtatggtattccatcttgtgtttttcacatgttctacagtgatgtatatctcattttgctggttgaaaccttaatatagtttactgtatttttatttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g09750.2 (Oryza sativa), 5'ss of exon 3
TTGTTCAAGAAACCTGGATGGATCCTGCCATAGGCCTCACACCTTATGATGTCCATAAGCATGTTGGGTTTCTCAAGCATCTGATGATAAGAACTGGAAGgtatggtattccatc---ttgtgtttttcacatgttctacagtgatgtatatctcattttgctggttgaaaccttaatatagtttactgtatttttatttttt-
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TTGTTCAAGAAACATGGTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTGCACAAGCATGTTGGATTTCTCAAACATCTTATGATAAGAACTGGAAGgtatggtgtcctatctgattgtgagttccacctatgaatgtatgatgccctcctgcatttttaccatgtagc---agtata-tctataaagactatagtgcatg
upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGTTCAAGAAACCTGGATGGATCCTGCCATAGGCCTCACACCTTATGATGTCCATAAGCATGTTGGGTTTCTCAAGCATCTGATGATAAGAACTGGAAGgtatggtattccatcttgtgtttttcacatgttctacagtgatgtatatctcattttgctggttgaaacct-taatatagtttactgtatttttatttttt-----
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CTGTCCAAGATTGCTGGAGAGATCCTGAATTAAGTCTTTCACCATATGATTGTCGTTCACATGTTGGGTTTCTTAAACATTTGATGCTGAGAACTGGAAGgtattaaaggta--cttgaat----catattgtcggtagaataagaaacttgttcttgtaacataagaccagtaacagggaatagtgtgtttgtcatgatgaactaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32916675|gb|CF021487.1|CF021487EST: ATAAGAACTGGAAG AAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATG
genomic: ATAAGAACTGGAAGgtatggtatt ... ttccccccagAAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTTCAAGAAACCTGGATGGATCCTGCCATAGGCCTCACACCTTATGATGTCCATAAGCATGTTGGGTTTCTCAAGCATCTGATGATAAGAACTGGAAGgtatggtattccatcttgtgtttttcacatgttctacagtgatgtatatctcattttgctggttgaaaccttaatatagtttactgtatttttatttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG