Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaattatctgttcccgtaacaattgcactgttttcttgtaaaataaaccatagttttgtttttcaccag

Basic information

species Zea mays
transcript GRMZM2G115049_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g45950.1 (Oryza sativa), 5'ss of exon 3
TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaattat-ctgttcccgtaacaattgc---actgttttcttgtaaaataaaccatagttttgtttttcaccag----------------------------------------------------
|||  |||||| |||| ||||  | |||||   |||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||| ||||| | | ||    || | ||  ||   |  |  || |   ||| |||| ||   |         |  || ||  |  ||  |                                                     
TGCTGGCACGAAGAAAAATGAGTCCATCTTCTCTGAAATCCAGAGCCAGGTGAAGAACAACAATGTGTCCGTGGATGTGAAAGCAACTTCAGACTCAAAAgcacgttcttttcttcttctcttctctctcttccataacttttttattaccatgcctttgctgattatgcatagcatgaaattaaggccgccatttctgtagcagtgactgattaattatctcttttgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348128|gb|DN215101.1|DN215101
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211069746|gb|FL326276.1|FL326276
EST:     GAAGCACAACAATGTGACTGTGGATGTGAAAGGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTT
genomic: GAAGCACAACAATGTGACTGTGGATGTGAAAG-CAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTT
EST: gi|211067138|gb|FL332478.1|FL332478
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211118967|gb|FL349445.1|FL349445
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211282848|gb|FL309040.1|FL309040
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|60349522|gb|DN216495.1|DN216495
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71314453|gb|DR793854.1|DR793854
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|101387379|gb|EB815705.1|EB815705
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211455059|gb|FL323071.1|FL323071
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71436182|gb|DR817232.1|DR817232
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211463261|gb|FL358480.1|FL358480
EST:     TGAAGCACAACAATGTGACTGNGGATGTGAAAGCAACTTCAGAATCAAAT                         GNGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211462556|gb|FL333206.1|FL333206
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|15545704|gb|BI643498.1|BI643498
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149014219|gb|EE043774.2|EE043774
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149081524|gb|EE170660.2|EE170660
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149108403|gb|EE292740.2|EE292740
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|76282636|gb|DV022204.1|DV022204
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211455392|gb|FL341711.1|FL341711
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211505801|gb|FL357190.1|FL357190
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|84351536|gb|DW245941.1|DW245941
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|91056164|gb|EB166582.1|EB166582
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211500080|gb|FL310132.1|FL310132
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|89764236|gb|DY691118.1|DY691118
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|29130483|gb|CB381187.1|CB381187
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|76917796|gb|DV167007.1|DV167007
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71303230|gb|DR787717.1|DR787717
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|37424398|gb|CF649931.1|CF649931
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|101395788|gb|EB819821.1|EB819821
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211095737|gb|FL312081.1|FL312081
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|9794381|gb|BE552689.1|BE552689
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71448665|gb|DR829715.1|DR829715
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|32909156|gb|CF013968.1|CF013968
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|74241152|gb|DT649066.1|DT649066
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71430935|gb|DR811985.1|DR811985
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|148963152|gb|EE014121.2|EE014121
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149080662|gb|EE169719.2|EE169719
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|32906855|gb|CF011668.1|CF011668
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211342710|gb|FL349130.1|FL349130
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211512108|gb|FL316104.1|FL316104
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCM
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149013973|gb|EE043481.2|EE043481
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211148579|gb|FL032470.1|FL032470
EST:     GAAGCACAACAATGTGAACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: GAAGCACAACAATGTGA-CTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|93012482|gb|EB638002.1|EB638002
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|76289467|gb|DV029035.1|DV029035
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211399297|gb|FL337150.1|FL337150
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|213191071|gb|FM193242.1|FM193242
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|91873213|gb|EB403170.1|EB403170
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|50327068|gb|CO522194.1|CO522194
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149107027|gb|EE188922.2|EE188922
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|148950071|gb|EC895603.2|EC895603
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|71757445|gb|DR955382.1|DR955382
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|50325873|gb|CO520999.1|CO520999
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|149112693|gb|EE295526.2|EE295526
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|78111026|gb|DV529423.1|DV529423
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|32907264|gb|CF012077.1|CF012077
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|78109070|gb|DV527487.1|DV527487
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211148582|gb|FL032473.1|FL032473
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|60341814|gb|DN208787.1|DN208787
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|9255285|gb|BE345753.1|BE345753
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|15590470|gb|BI675086.1|BI675086
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211033926|gb|FL358169.1|FL358169
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|9255417|gb|BE345885.1|BE345885
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCT
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCT
EST: gi|101390351|gb|EB817110.1|EB817110
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
EST: gi|211222771|gb|FL342810.1|FL342810
EST:     TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAAT                         GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA
genomic: TGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 272

TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 296

TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 274

TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 831

TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaa ... ttttcaccagGTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTTCAGAATCAAATgtaagtggaattatctgttcccgtaacaattgcactgttttcttgtaaaataaaccatagttttgtttttcaccag

- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA