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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATCATTGGCGTCATGGCGAAGCAGCGGTTGCCTTACCCATCTAGGGCGTTCGATATGGCACATTGCTCGCGCTGTCTGATTCCTTGGGATGAACACGgtgagtactccaaggacatttttcaagttgttcttgggtagaaaacgaactgactgacttggtgcatgctctcaaacttcctttag

Basic information

species Zea mays
transcript GRMZM2G114570_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114570_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g36690.4 (Oryza sativa), 5'ss of exon 3
GCCATCATTGGCGTCATGGCGAAGCAGCGGTTGCCTTACCCATCTAGGGCGTTCGATATGGCACATTGCTCGCGCTGTCTGATTCCTTGGGATGAACACGgtgagtactccaa-------ggac-----------------------atttttcaagttgttcttgggtagaaaacgaactgactgacttggt-gcatgctctcaaacttcctttag
|||||||| ||||| ||||  ||||| ||| ||||||||||||||||| | || |||||||||||||| || |||||  ||||||||||| ||||    |||||| ||| |||       | |                        | |||||||| | | ||| |||  |||      | ||| | |  || | ||| ||| ||  ||   ||||
GCCATCATCGGCGTGATGGGAAAGCAACGGCTGCCTTACCCATCTAGGTCATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcacttcaatacatttgaattggtttcaatgtatcttgccccaagttttcaagctatccttaggtccaaatattgttcactaattgagttggatgttctgaattttttgttag

upper sequence: GRMZM2G114570_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S43_199V6.2 (Physcomitrella patens), 5'ss of exon 3
GCCATCATTGGCGTCATGGCGAAGCAGCGGTTGCCTTACCCATCTAGGGCGTTCGATATGGCACATTGCTCGCGCTGTCTGATTCCTTGGGATGAACACGgtgagta-ctccaaggac-----atttttcaa--gttgttcttgggtagaaaacgaactgactgacttggtg-catgctctcaaacttcctttag-----
|||||  ||||  | ||||| | |   ||  | ||||||||  |  |  |||| ||||||||||||||||| |||||||| |||||||||| ||     ||| || | || | |   |     |||    ||   | |   |||| | |  |||    |  |    ||  || |  |   |    | | |||| |     
GCCATTCTTGGGATTATGGCCACGATTCGACTACCTTACCCCGCCCGATCGTTTGATATGGCACATTGCTCACGCTGTCTCATTCCTTGGGGTGCGACGGgtaagcaactgcgacatctgccgattgcgaaacaatcgcatttggttgggcaacatcttcccgtgttttctgacgagaagtatgtcgttcttttgtgtag