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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGTTGCGGCGACATCCATCGCCAGGCCTAGGGCGGATGTCGCCTACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttctatggatgccacttttccttgttcgtgctgtctcttgagatttcattgtttttgggtgcattcttgattggactttctttttgtgaacatgc...

Basic information

species Zea mays
transcript GRMZM2G114513_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211095367|gb|FL067776.1|FL067776
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211053570|gb|FL256697.1|FL256697
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211097837|gb|FL067788.1|FL067788
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211079577|gb|FL056323.1|FL056323
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211097840|gb|FL067791.1|FL067791
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211092899|gb|FL067769.1|FL067769
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095361|gb|FL067770.1|FL067770
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|21760018|gb|BQ635559.1|BQ635559
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095370|gb|FL067779.1|FL067779
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095362|gb|FL067771.1|FL067771
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTATATCCATAGACTTCTTCGTGAGGGTGA
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTA-ATCCATAGACTTCTTCGTGAGGGTGA
EST: gi|211053576|gb|FL256703.1|FL256703
EST:     ACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050621|gb|FL256688.1|FL256688
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211053574|gb|FL256701.1|FL256701
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211053578|gb|FL256705.1|FL256705
EST:     ACTGTATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATA
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATA
EST: gi|211050623|gb|FL256690.1|FL256690
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211092898|gb|FL067768.1|FL067768
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211092897|gb|FL067767.1|FL067767
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050624|gb|FL256691.1|FL256691
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050619|gb|FL256686.1|FL256686
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|33099286|gb|CF059246.1|CF059246
EST:     ACTGCATCCACGCTCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211097835|gb|FL067786.1|FL067786
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095373|gb|FL067782.1|FL067782
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095375|gb|FL067784.1|FL067784
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050626|gb|FL256693.1|FL256693
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|9254928|gb|BE345396.1|BE345396
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GGTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211053573|gb|FL256700.1|FL256700
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211097834|gb|FL067785.1|FL067785
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050628|gb|FL256695.1|FL256695
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095371|gb|FL067780.1|FL067780
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211053572|gb|FL256699.1|FL256699
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|32823840|gb|CD963562.1|CD963562
EST:     ACTGCATCCACGCTCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211050625|gb|FL256692.1|FL256692
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095369|gb|FL067778.1|FL067778
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
EST: gi|211095366|gb|FL067775.1|FL067775
EST:     ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATT                         GTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT
genomic: ACTGCATCCACGCGCTTGCCCGCCGTCTTGCCAAGACCCGCAACTGGATTgtaagttcta ... cgacatgtagGTTGCTCTGAAAGCACTTGTAGTAATCCATAGACTTCTTCGTGAGGGTGAT