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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACGGGGGATATGCTTACCATGGCAACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctattctttggtgcaatacattttatctgctcatagtcatatgtagtgcttcgttgttcttgtggctaaattggatttaaacttctttttcag

Basic information

species Zea mays
transcript GRMZM2G114220_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114220_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g48770.1 (Oryza sativa), 5'ss of exon 3
TTTTACGGGGGATATGCTTACCATGGCAACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctattctttggtgcaatacattttatctgctcatagtcatatgtagtgcttcgttgttcttgtggctaaattggatttaaacttctttttcag-------------------
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TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAGgtatccttctcccctgtgctgt-tattgaaatatctagcattgttttatccttttacatgatgaactggatttaactgtcttttttttccttttttttttttgcttcatttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211392505|gb|FL156794.1|FL156794
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211389874|gb|FL156779.1|FL156779
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211389876|gb|FL156781.1|FL156781
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAG-CGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211389878|gb|FL156783.1|FL156783
EST:     ACTCGTTTGAGCAAACATACCGTTGGTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392499|gb|FL156788.1|FL156788
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392496|gb|FL156785.1|FL156785
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211389879|gb|FL156784.1|FL156784
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAG-CGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|50338446|gb|CO533572.1|CO533572
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392507|gb|FL156796.1|FL156796
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392498|gb|FL156787.1|FL156787
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAG-CGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|76909136|gb|DV163240.1|DV163240
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|6637070|gb|AW261342.1|AW261342
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGCGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|71417924|gb|DR804257.1|DR804257
EST:     ACTCGTCTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392504|gb|FL156793.1|FL156793
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392503|gb|FL156792.1|FL156792
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|91049005|gb|EB159423.1|EB159423
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|32859779|gb|CD999460.1|CD999460
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|32862738|gb|CF002420.1|CF002420
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211395124|gb|FL156801.1|FL156801
EST:     ACTCGTTTGAGCAAACATACCGTTGGTATGCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392510|gb|FL156799.1|FL156799
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211395123|gb|FL156800.1|FL156800
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211392502|gb|FL156791.1|FL156791
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|211389877|gb|FL156782.1|FL156782
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAG-CGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|91873355|gb|EB403312.1|EB403312
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|14242735|gb|BG840580.2|BG840580
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|213183590|gb|FM196389.1|FM196389
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG
EST: gi|93015584|gb|EB641104.1|EB641104
EST:     ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAG                         CCACACCTGGAAGGCGGTGATAAAG
genomic: ACTCGTTTGAGCAAACATACCGTTGTTATCCAGCATCGTTTTTTGATAAGgtatgctatt ... tctttttcagCCACACCTGGAAGGCGGTGATAAAG