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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa...

Basic information

species Zea mays
transcript GRMZM2G114126_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactat---gttccgaattagacttcttgagatt-------tacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |     ||  | |||||   |   ||  |       |   ||   | | | ||   | || ||||   | |  |  |||| |    || || |       
GAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGgtttgtactgttaaactcacatttagagcgcagtagcctgtgttcgtcttctcatcctgtgcattggcagaatgt---tacgttcatttgcttagcgtagtat-------

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 3
-GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatt--tacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa--------
 ||| |||||||| |||||  | || || ||| | |||||| | ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||| |||  ||| | |     |  | || ||     |  |||| |  | |   || | | |   |  | ||||  |  ||   |||    | ||| | | | |        
GGAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCGGTTATCATTTTTGAGCCAATGACAATACTTCAGAAAATGGCTGAggtctgttttatatactttgctgcatttgtttttgctattacattaac-acaaactatttagcaaattctctgtca--gtacaatctcattggtcataatacattttcaca

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagactt-cttgagat-ttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa---------
||| |||||||| |||||  | || || ||| | |||||| | |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| |||| | |     |  | || |||  | | ||||| |  | |   || | | |   |  | ||||| |  ||   |||    | ||    | | |         
GAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgctatatactttgctgcatttgcttttgctattacattaac-acaaactatttagcaaattttctgcca--gtacaatctcattggttgcaatatattttcacag

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa--
||||||||||||||| || || || |||||||| |||||| | || ||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||||| ||   | ||    |||   ||  ||   | | |  ||   |  | |       |  ||| |  ||| ||| |||| | |||   | ||  ||    
GAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGCTTCAGAAAATGGCAGAGgtttgcaca--gctctattttattttttgtgttttctgctttgttaaattgctttatttgtttgtattggcacttgattgagctttgaattgttcgaactag

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggat-gtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||| ||||| || || || ||||| |||||| | |||||||| ||||| || || ||||| |||||||| ||| |||||||||| |||||||  | | |||  ||     || | | |  |      ||| |||    | ||      |  ||| |  | || ||||| ||||                   
GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACACTACCAGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGg--tatgctaacttttagttttgccattgttgatgatac-ctgaatttgtagtgtcaattgattgaatttgaaattgcttgaaatag--------------

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||| ||||| || || || ||||| |||||| | |||||| | || || || || ||||| |||||||| ||| |||||||||| ||||||||  |   ||   |  |  ||    || ||||   | ||  |   |        |    |  ||  | || || |      | ||||   |         
GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACATTACCTGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggc-ttactcttagttttgccattgttgatgat-accttaatctgtagtgtcaattgattgaatttgaaaattgaaattgcttgaaatag-------

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||| ||||| ||||| || |||||||||||  | || || ||||| || || |||||||| || ||||||||| | |||||||||||||||||||||    | ||     ||||| |   ||| |  |    | ||         ||   | |  ||| |    ||  |  ||  |||| |||| |  |  
GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtg--gtcttagattttagattatatgaaagatcttttagcttctggtttctattgaacatgttt-tggtttctccat--ttgttgtctctgcag-

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa-
|||||||||||| || || ||||| || ||| |||| ||| | ||||| ||||| ||  | || |||||||| ||||| ||||| ||||| |||||||||||| ||  |||    | ||||     || || | ||     |    || |     |      ||||| | |  |  | | |   |||     ||   | | 
GAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCTTCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAGATGGCTGAGgttagtgttatacatctaatt----ctcctgtgtttg----taagtatttgttgttttt---tgtgtgtactgtattataacatttgcaaatttctcacag

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G09300.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtact-atgttccgaatta--gacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||| |||||||||||||| |||||||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||||||||| ||||||||| || ||| ||  |  |   || || ||    | |    | |   | |  ||    | ||||      ||||  | ||  |  |||      ||    
GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGgtttgtgctcatgatcacatctgatgatttgttcctgtctgatatagt--tttgtaatccgatgatgc-----caatgatatgtgctctgtttctggtag---

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgt--tccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||| ||||| ||||| |||||||| || ||| | ||||||||||||||  | ||||||||||||||||||||||||||||||||||| || || ||| | || |  |  | || ||     ||||  ||||   |||     |    ||  ||  ||| ||     |||    ||  |    |  | | | | 
GAAGATGATGCAAAAGTATATAGGTTCAGATGTCACCTCAATGGTGACACTTCCAGTTCTGATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAAgtatgtgccatctagtttgtataag----tttgatgtttatcttggtagattgtctct--agcctgtttcaaatgttgca-aattgtgaatgcttgtgacag

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacact--ggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa
|||||||||||||||||| ||||| || ||||| |||||| | ||||||||||| || || |||||||||||  |||| || || |||| |||||| ||||||| |   || ||     ||| |||   |   | | |   |  |||     |   | |         |      ||  |   |   ||    || | | | 
GAAGATGATGCACAAGTATATAGGCTCTGATGTCACATCAATGGTGACACTTCCTGTTATGATTTTTGAGCCGTTGACTATACTGCAGAGAATGGCAGAGgttttt-tcatttttgtgtttaaactgtattgcagtaatgttagggctgctcaaggcagttcagctgattgaatgttactaactgtatgatacctgttacag

upper sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgt-ttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa-
||| |||||||||||||||||||| || ||  |||| ||| | ||||||||||||||||| || |||||||| ||||| | ||||||||| ||||||||||| || |  ||  ||     |  |    |   | || |         ||||   | |  |  |||  ||||| ||    ||||  |||     | |  | | 
GAAAATGATGCACAAGTACATAGGTTCTGACATTACTTCAATGGTGACACTTCCAGTCATCATATTTGAGCCCATGACTACGCTTCAGAAGATGGCTGAGgtatttttttactttttttgtgcgtggccgcaaaatatttggctttaatctttgagtacaaaatgattctgctatc-cgtgatg-ttgcaaattctgtatac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211354689|gb|FL118768.1|FL118768
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|211354687|gb|FL118766.1|FL118766
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAG
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAG
EST: gi|211354688|gb|FL118767.1|FL118767
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATC-A
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|211354685|gb|FL118764.1|FL118764
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|71438648|gb|DR819698.1|DR819698
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|74236529|gb|DT644443.1|DT644443
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|26558339|gb|CA830574.1|CA830574
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|211354691|gb|FL118770.1|FL118770
EST:     TTCCAGTCATATTTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACCTGTGAGTTGTTAGAC
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATAC-TGTGAGTTGTTAGAC
EST: gi|211354686|gb|FL118765.1|FL118765
EST:     TTCCAGTCCTAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|149105113|gb|EE290596.2|EE290596
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|148961873|gb|EE012659.2|EE012659
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|32801394|gb|CD953630.1|CD953630
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATC
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATC
EST: gi|71329770|gb|DR801598.1|DR801598
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: gi|87155561|gb|DY400350.1|DY400350
EST:     TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG                         TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA