Sequence
atgc intronic sequence ATGC exonic sequenceGTTATACATGGTAACTCTTTATGCACGTTTCGAGTTGTAGATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctgtaaattgtcacagtcagggcttctaattgctgaattcgttttcttcaaccaggttaatatcgagcaattctgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113995_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g47110.3 (Oryza sativa), 5'ss of exon 3
GTTATACATGGTAACTCTTTATGCACGTTTCGAGTTGTAGATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctgtaaattgtcacagtcagggcttctaattgctgaattcgttttcttcaaccaggttaatatcgagcaattctgttgcag
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CTTATTCCTATATGTTATTTTTGCACGTTCTGATTTGCAGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGgtttaataa--gctattttaagttatgctcatcagatagcttgccttgtt-agtgaagctaaggtttggtggctttgttgcag
upper sequence: GRMZM2G113995_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g47110.1 (Oryza sativa), 5'ss of exon 4
GTTATACATGGTAACTCTTTATGCACGTTTCGAGTTGTAGATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctgtaaattgtcacagtcagggcttctaattgctgaattcgttttcttcaaccaggttaatatcgagcaattctgttgcag
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----------------------------------------ATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGgtttaataa--gctattttaagttatgctcatcagatagcttgccttgtt-agtgaagctaaggtttggtggctttgttgcag
upper sequence: GRMZM2G113995_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 4
GTTATACATGGTAACTCTTTATGCACGTTTCGAGTTGTAGATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctg----------taaattgtcacagtcagggcttctaattgctgaattcgttttcttcaaccaggttaatatcgagcaattctgttgcag
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----------------------------------------ATCTATGTTGTTGATTCCTTGGATCGAGAGAGGATTGGAAAAGCAAAGGCAGAGTTTCAGgttgggtgtcctagataatgcatttatgtcaaacgtcttaattggttgattagttt--ctcagttagtttacttat-----ttcttctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76014240|gb|DT941410.1|DT941410EST: TTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAG GCAATAATCAAAGATCCTTTGATGCTTAACAGTGTTATACTGGTACTTGC-
genomic: TTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctgtaaat ... tctgttgcagGCAATAATCAAAGATCCTTTGATGCTTAACAGTGTAATACTGGTACTTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATACATGGTAACTCTTTATGCACGTTTCGAGTTGTAGATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTGAATTTCAGgtctgtaaattgtcacagtcagggcttctaattgctgaattcgttttcttcaaccaggttaatatcgagcaattctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA