1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgttttattgctaaaatgatattgatctgtactctactttgtaattgttctgcttgatgagttgggttacttatgtttgtcttggtgagtttatggg...
species | Zea mays |
transcript | GRMZM2G113995_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGA-TTGGAAAAGCCAAAGCTEST: gi|211423855|gb|FL404537.1|FL404537
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTCGAATCGTTGGATCGGGAGAGAAEST: gi|33771194|gb|CF273373.1|CF273373
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAA
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211029880|gb|FL404674.1|FL404674
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211290604|gb|FL410977.1|FL410977
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211461841|gb|FL417627.1|FL417627
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211212184|gb|FL397467.1|FL397467
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|33103749|gb|CF063709.1|CF063709
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGAGAGAGAATTGGAAAAGCCAAATCTEST: gi|211266589|gb|FL404010.1|FL404010
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211141968|gb|FL418185.1|FL418185
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211156685|gb|FL406071.1|FL406071
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|9731677|gb|BE510429.1|BE510429
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211334235|gb|FL381816.1|FL381816
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211003691|gb|FL416464.1|FL416464
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211115280|gb|FL397760.1|FL397760
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211363304|gb|FL391107.1|FL391107
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211108318|gb|FL385993.1|FL385993
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211466099|gb|FL374831.1|FL374831
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|9731678|gb|BE510430.1|BE510430
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211060681|gb|FL415617.1|FL415617
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCCTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|5055809|gb|AI734696.1|AI734696
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCACCAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211198832|gb|FL369949.1|FL369949
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCTEST: gi|211421603|gb|FL420626.1|FL420626
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGATTCGTTGGATCGGGAGAGAATTGGAAAAGCCAAAGCT
EST: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTG ATCTACGTAGTTGA
genomic: AAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgtttta ... cgagttgtagATCTACGTAGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgttttattgctaaaatgatattgatctgtactctactttgtaattgttctgcttgatgagttgggttacttatgtttgtcttggtgagtttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG