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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatggttttcagtgttccttgttccgaatgtttgttttacttggttagttcattctacatacagccagccacccttccatgcaaccgtgcaaac...

Basic information

species Zea mays
transcript GRMZM2G113726_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g38880.6 (Oryza sativa), 5'ss of exon 2
GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg-gttttcagtgttccttgttccgaatgtttgttttacttggttagttcattctacatacagccagccaccct-tccatgcaaccgtgcaaac--
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GTATGCACACCTGTAGATAAAGGGGCACTCTACTATGAGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAGgtgagagctgtgccttctggagtcgtaattttgagttcttaa---acattagaaact-actatgtattaggcgacatatccaatacattccaaggtcaaaagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961405|gb|CN844114.1|CN844114
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|211200072|gb|FL195839.1|FL195839
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATYTAGTGTGGGCAACAACAAAGGCACGATGTGTATCTTATGTC
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAA-GGCACGATGTGTATCTTATGTC
EST: gi|5555361|gb|AI881312.1|AI881312
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|60349121|gb|DN216094.1|DN216094
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|32919928|gb|CF024740.1|CF024740
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|60398028|gb|DN230844.1|DN230844
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|32795211|gb|CD947447.1|CD947447
EST:     AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: AGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
EST: gi|109179023|gb|EC379766.1|EC379766
EST:     GGTCGGTGAAACCGACCATCCGTCATTTCCAG                         TTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA
genomic: GGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg ... tgtcttgcagTTGAGGAATTTAGTGTGGGCAACAACAAGGCACGATGTGTATCTTATGTCA