1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgtttaacttggtagttttaagtaaccatgttctttcctgtgacaatccctctattgcgtaatgtctacttcaatattttaaaacaaaaaaac...
species | Zea mays |
transcript | GRMZM2G113640_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270652|gb|FL248442.1|FL248442
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270657|gb|FL248447.1|FL248447
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270648|gb|FL248438.1|FL248438
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270651|gb|FL248441.1|FL248441
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270649|gb|FL248439.1|FL248439
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|113778235|gb|DW895596.1|DW895596
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCCEST: gi|211270655|gb|FL248445.1|FL248445
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCC
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|211270656|gb|FL248446.1|FL248446
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAA
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgtttaacttggtagttttaagtaaccatgttctttcctgtgacaatccctctattgcgtaatgtctacttcaatattttaaaacaaaaaaac
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