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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTTGATATTCAAAGCATTCTATGGACTTGGGGCATTGATATTTGGCAATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAAgtatgtatattctttccattagttggcttatcgaatgatccaggtgctttttactccctccattccaaattgtaagtcgttttggcttttttagtattta...

Basic information

species Zea mays
transcript GRMZM2G113476_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113476_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g38850.1 (Oryza sativa), 5'ss of exon 3
GGTGGTTGATATTCAAAGCATTCTATGGACTTGGGGCATTGATATTTGGCAATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAAgtatgtatattctttccattagttggcttatcgaatgatccaggtgctttttactccctccat--tccaaattgtaagtcgttttggcttttttagtattta-----------------------------
|||||||| |||||||||| |||||||| || | ||| || || | ||||||||||||||| |||||||| ||||||||||||||  ||   || || ||||||||||| ||| || ||   ||    ||   ||| ||   | || | |  | | ||   |    | |||||      | | ||   |||    |||||                               
GGTGGTTGGTATTCAAAGCGTTCTATGGGCTCGTGGCGTTAATCTGTGGCAATGGTTACATCGTTGGGATCAATCAGATCTATGACATTAGAATCGATAAgtatgtataatctctctatagattcatataagaaattatggtgatgttatgaattaccattaagaacaaaatttccttgcctatttcttttaactgtattctgacatttctaattttatgctgctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922521|gb|DV169042.1|DV169042
EST:     AATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAA                         GTTTTTCAATTGTTATATCAAACTTTGGACCTTTCATTACCTCTCTATACT
genomic: AATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAAgtatgtatat ... gcagctgcagGTTTTTCAATTGTTATATCAAACTTTGGACCTTTCATTACCTCTCTATACT
EST: gi|211301711|gb|FL094621.1|FL094621
EST:     AATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAA                         GGTTTTTCAATTGTTATATCAAACTTTGGACCTTTCATTACCTCTCTATAC
genomic: AATGGTTACATAGTTGGGATTAATCAGATCTATGATGTTGCTATTGACAAgtatgtatat ... gcagctgcagG-TTTTTCAATTGTTATATCAAACTTTGGACCTTTCATTACCTCTCTATAC