1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTCATTGTGGAAGCTCTCAAGATGGACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTTgtgagtcaaatttctgtttgacttatttttagtttatatgtaaattctgtatagtgtatacacaactttattcacatgtttgattgattttatttatgatcctag
species | Zea mays |
transcript | GRMZM2G113453_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTT GTAAGTGAAGAAGTAGAGCGTGCTTEST: gi|71765900|gb|DR963837.1|DR963837
genomic: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTTgtgagtcaaa ... atgatcctagGTAAGTGAAGAAGTAGAGCGTGCTT
EST: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTT GTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATCEST: gi|149108986|gb|EE293082.2|EE293082
genomic: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTTgtgagtcaaa ... atgatcctagGTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATC
EST: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTT GTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATC
genomic: ACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTTgtgagtcaaa ... atgatcctagGTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCATTGTGGAAGCTCTCAAGATGGACAGTTTGCAGAAACTCTGTTCATCGCTTGAGCCTATTCTCCGAAGAGTTgtgagtcaaatttctgtttgacttatttttagtttatatgtaaattctgtatagtgtatacacaactttattcacatgtttgattgattttatttatgatcctag
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