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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGTGGACCACCGCCTGGAGGAGAATGCAGAGGAGCGGGAGCGCGTCACGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagttcaattcgagtcagttagtaacttccttatcctcaatcaatcgtacgagcatcttgctgatgcactgttgtatgtttttttgggaaattag

Basic information

species Zea mays
transcript GRMZM2G113016_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g49040.1 (Oryza sativa), 5'ss of exon 3
AACCGTGGACCACCGCCTGGAGGAGAATGCAGAGGAGCGGGAGCGCGTCACGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagttcaattcg-agtcagttagtaacttccttatcctcaatcaatcgtacgagcatcttgctgatgcactgttgtatgt--ttttttgggaaattag-------------------------------------------------
 ||||| |||||||||||||| |||||||| |||||||||||||| || || |||||||||||||| || ||||| |||||||||||||| || |||||||||  ||| |||    || |||  | |||    |  |        ||  ||  |      |   ||   |||||| || | | ||    ||| |    | |  |                                                 
CACCGTCGACCACCGCCTGGAAGAGAATGCCGAGGAGCGGGAGCGGGTTACCGCCAGCGGTGGGGAGGTCGGCCGCCTCAATCTCTTCGGCGGCCAGGAGgta--ccaattcgccccgcagtttggtagatgatggccagattgaaaaaaagagaggcttcgcttttgcgatgcattgctatgtgaagctttgtttccagtcggccatgttctgttttgtgatgcattgttgttgtttgatgctttgttctag

upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G39260.1 (Glycine max), 5'ss of exon 4
AACCGTGGACCACCGCCTGGAGGAGAATGCAGAGGAGCGGGAGCGCGTCACGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagttcaattcgagtcagttagtaacttccttatcctcaatcaa--tcgtacgagcatcttgctgatgcactgttgtatgtttttttgggaaattag
 || || || ||| | ||||| ||||||||||| ||| ||||||| || || ||||||||||| ||||||||  | |||||| | || || ||  | ||||||          || | | |||  |  |    || |  |    ||| ||  | ||   | | |  |  |  ||   ||   ||||||| |            
GACAGTTGATCACAGACTGGAAGAGAATGCAGAAGAGAGGGAGCGTGTTACTGCCAGCGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGgta--------tgatgc-aatcaccttttgcgctcatgctttctaataaagattgtttaaacttagtagttttggtttgcgttatgtttatag----------

upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G41810.2 (Glycine max), 5'ss of exon 4
AACCGTGGACCACCGCCTGGAGGAGAATGCAGAGGAGCGGGAGCGCGTCACGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagttcaattcgagtcagttagtaacttccttatcctcaatcaatcgtacgagcatcttgctgatgcactgttgtatgtttttttgggaaattag
 || || || ||| | ||||| ||||||||||| ||| |||||||||| || ||||||||||| ||||||||  | |||||| | || || ||  | ||||||      | ||||      || |  |   ||| || ||     |   || |    | | |  |  |  ||   || | ||||||| |            
GACAGTTGATCACAGGCTGGAAGAGAATGCAGAAGAGAGGGAGCGCGTTACTGCCAGCGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGgta---tgatgcaatc---accattgtg---ctttctaat-----aaagattgcttaaacttagtagttttggtttgctttatgtttatag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71322508|gb|DR797928.1|DR797928
EST:     CGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCCGTGGTCAGGAG                         GTTGGTCCTCT
genomic: CGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagt ... gggaaattagGTTGGTCCTCT
EST: gi|89251895|gb|DY623681.1|DY623681
EST:     CGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAG                         GTTGGTCCTCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATT
genomic: CGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagt ... gggaaattagGTTGGTCCTCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATT
EST: gi|93284247|gb|EB676511.1|EB676511
EST:     CGGTCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAG                         GTTGGTCCTCTCCGGTGCTGGCCTGGTGCCTTGTGCCTTTCAAGATCCATT
genomic: CGGCCAGCGGTGGGGAAGTAGGCCGGCTCAATCTCTTCGGTGGTCAGGAGgtaaaccagt ... gggaaattagGTTGGTCCTCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATT