Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgttttacctacacatggattcactcagtgtactgtatctgcattcgcgctatttcagaattggtgtgatgttgtcattttgatgtctgaaata...

Basic information

species Zea mays
transcript GRMZM2G112865_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112865_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62210.1 (Oryza sativa), 5'ss of exon 4
GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaat-ctgttttacctacacatggattcactcagtgtactgtatctgcattcgcgctatttcagaattggtgtgatgttgtcattttgatgtctgaaata-----------
|| ||   | ||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||  || |||| ||||  ||  || |  |     || ||  | |   |    ||| ||| |     | || ||| | |||   ||| |||||  ||| |  |  |  | ||||           
GGCACATTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAgtaaaactccttcatgtgt-tgtgtatcaatttgat---ttgtttctac-----cactgtttaaaaat--atgtcatgttagcatctc-acataaggaataaagtaaaatgc

upper sequence: GRMZM2G112865_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g38580.1 (Oryza sativa), 5'ss of exon 4
GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaa--tctgttttacctacacatggattcactcagtgtactgtatctgcattcgcgct---atttcagaa-----ttgg-tgtgatg--ttgtcattttgatgtctgaaata----------------
||||| |   ||||||||||||||||  | |||||||||||||||||  |||| ||||| ||| |||| || || || ||||  ||||||| ||||  | |      |    |  ||| ||||||     |  || || |   |||  |||   || ||  ||     |||| ||| | |  ||  | | |  |||||    ||                 
GGTACGCTTGATGCAGCAAGACGTGCCTCAGCCTTTGTTCGGGGTGACAATGTTGTTCACAAGTTATTCACAGAACTCGCCTACCGCTACAAgtaacttttagcccgctatgagttggtttcacttttgattttg-atttttgttctggctagcatgtctaaaggaacttggctgtcaagatttaccttatgcatgtccattatgtttcctttgtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33099991|gb|CF059951.1|CF059951
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|37393499|gb|CF634015.1|CF634015
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|113684918|gb|DW837812.1|DW837812
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTAC
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTAC
EST: gi|113740638|gb|DW856220.1|DW856220
EST:     GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTAACAG                         AGATCGAGCTGGGGGCTAC
genomic: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTA-CAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTAC
EST: gi|60353121|gb|DN220094.1|DN220094
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|110963515|gb|EE183415.1|EE183415
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|22490485|gb|BU050408.1|BU050408
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|21987795|gb|BQ779323.1|BQ779323
EST:     GG-GATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|32929716|gb|CF034528.1|CF034528
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|60356193|gb|DN223166.1|DN223166
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|60397912|gb|DN230728.1|DN230728
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|87151864|gb|DY396653.1|DY396653
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|18965108|gb|BM661397.1|BM661397
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|19058032|gb|BM736699.1|BM736699
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTA
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTA
EST: gi|32909297|gb|CF014109.1|CF014109
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|50337603|gb|CO532729.1|CO532729
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|22545985|gb|BU098344.1|BU098344
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|166482064|gb|EG123746.1|EG123746
EST:     GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: gi|148963908|gb|EE015020.2|EE015020
EST:     GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG                         AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG