1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaacgcaagtctcctgatgctaattaaataccaacttgaaatatccggccatttcgtggtatccttgaatctatgcagggcactgactgtaaa...
species | Zea mays |
transcript | GRMZM2G112865_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058276|gb|FK981928.1|FK981928
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCRGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|110963515|gb|EE183415.1|EE183415
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055303|gb|FK981914.1|FK981914
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTTCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055307|gb|FK981918.1|FK981918
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058285|gb|FK981937.1|FK981937
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|22521341|gb|BU080152.1|BU080152
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058284|gb|FK981936.1|FK981936
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|32909297|gb|CF014109.1|CF014109
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|37393499|gb|CF634015.1|CF634015
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|60356193|gb|DN223166.1|DN223166
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055308|gb|FK981919.1|FK981919
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|60353121|gb|DN220094.1|DN220094
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|32909298|gb|CF014110.1|CF014110
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055312|gb|FK981923.1|FK981923
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058281|gb|FK981933.1|FK981933
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: GAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTNGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGGTGATGAEST: gi|211055306|gb|FK981917.1|FK981917
genomic: GAAGGAGGTTCGGCGGAAGGCGGATCAGATGGT-GCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGG-TGATGA
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055310|gb|FK981921.1|FK981921
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|22490485|gb|BU050408.1|BU050408
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|78022550|gb|DV490937.1|DV490937
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055309|gb|FK981920.1|FK981920
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|21987795|gb|BQ779323.1|BQ779323
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: GGAT-AGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGG-GATGATEST: gi|4730329|gb|AI649495.1|AI649495
genomic: GGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058275|gb|FK981927.1|FK981927
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058282|gb|FK981934.1|FK981934
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|60397912|gb|DN230728.1|DN230728
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: GGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211061247|gb|FK981940.1|FK981940
genomic: GGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|148963908|gb|EE015020.2|EE015020
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|87151864|gb|DY396653.1|DY396653
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058274|gb|FK981926.1|FK981926
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTNGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|18965108|gb|BM661397.1|BM661397
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: GGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|19058032|gb|BM736699.1|BM736699
genomic: GGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|113702176|gb|EE679680.1|EE679680
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|149097536|gb|EE183416.2|EE183416
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|148963909|gb|EE015021.2|EE015021
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|50337603|gb|CO532729.1|CO532729
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211058278|gb|FK981930.1|FK981930
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGRSGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGATEST: gi|211055304|gb|FK981915.1|FK981915
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
EST: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG GGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
genomic: CGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaa ... cgatatgtagGGTACTCAGCATGCAGCAAGACGTGCTGCTGCCTTTGTTCGGGGTGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGgtaattggaacgcaagtctcctgatgctaattaaataccaacttgaaatatccggccatttcgtggtatccttgaatctatgcagggcactgactgtaaa
- AAGGAG
- - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - AAGGAG