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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAATAGCTTGTGGAAATCCAAGAGGGATGAACAACGCCCATTAAGATATGATATGTCATATAATCTTGACCTCAGGGTTGTATCCTTATTAACACAGgtatatcgatttcctctgctgcaccacactattctagatttaagatgtttatatgtaatatgatcttattgagagtaacttattggatatatgtgtgtgc...

Basic information

species Zea mays
transcript GRMZM2G112782_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112782_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g14640.1 (Oryza sativa), 5'ss of exon 3
TTGGAATAGCTTGTGGAAATCCAAGAGGGATGAACAACGCCCATTAAGATATGATATGTCATATAATCTTGACCTCAGGGTTGTATCCTTATTAACACAGgtatatcgatttcctctgctgcaccacactattctagatttaagatgtttatatgtaa-----tatgatcttattgagagtaacttattggatatatgtgtgtgc
  ||||||||||||||||| ||||||| |||||||| |  || ||||||||||||||| || || |  | |||   |||||| || |||||||| |||||||||| | | |  | ||||||        |||| |||||  ||||  |  | |  |||           |    ||      | ||| | | ||  | ||     
GAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGgtataactactaaccctgctgagaggagttattgtagatgaaagaattaaagaaataaaccccccccccccccctgttttgcatttacttggtacctttg-----