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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagttatggagtgatatgcggtttgaaatttcgtattgttattgcccaattttggttacacaagtttgtgttcctgcag

Basic information

species Zea mays
transcript GRMZM2G111713_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131767|gb|FL358660.1|FL358660
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211177445|gb|FL359118.1|FL359118
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211361987|gb|FL325579.1|FL325579
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211474664|gb|FL315663.1|FL315663
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211093125|gb|FL308869.1|FL308869
EST:     GCATGATTGGCCACAATCTCTAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211147018|gb|FL367795.1|FL367795
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211532039|gb|FL347052.1|FL347052
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|71443106|gb|DR824156.1|DR824156
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211378112|gb|FL330003.1|FL330003
EST:     GCATGAT-GGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|50337823|gb|CO532949.1|CO532949
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211043460|gb|FL324042.1|FL324042
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|101389514|gb|EB816695.1|EB816695
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211203210|gb|FL341871.1|FL341871
EST:     GCATGATMGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211526596|gb|FL367655.1|FL367655
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211333000|gb|FL319500.1|FL319500
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211264640|gb|FL311733.1|FL311733
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCMAGTNCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATSATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211337834|gb|FL344315.1|FL344315
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTNC-AGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211095786|gb|FL316217.1|FL316217
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|61119623|gb|DN560584.1|DN560584
EST:     GGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|38687337|gb|CK144368.1|CK144368
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211208019|gb|FL322438.1|FL322438
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211140827|gb|FL324953.1|FL324953
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211442630|gb|FL341621.1|FL341621
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|89758224|gb|DY687488.1|DY687488
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|88758133|gb|DY542274.1|DY542274
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211061706|gb|FL341836.1|FL341836
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|148938688|gb|EC883024.2|EC883024
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|71420010|gb|DR804975.1|DR804975
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211482873|gb|FL313335.1|FL313335
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211412583|gb|FL353839.1|FL353839
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|148989211|gb|EE031705.2|EE031705
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|32913045|gb|CF017857.1|CF017857
EST:     TCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: TCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211474786|gb|FL319644.1|FL319644
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|91048124|gb|EB158542.1|EB158542
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|211481012|gb|FL352018.1|FL352018
EST:     GCATGATKGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
EST: gi|76923558|gb|DV169546.1|DV169546
EST:     GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAG                         GTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA
genomic: GCATGATTGGCCACAATCTCGAGGGGCCGTTGCCAGTCCACATTGTGAAGgttcgagtta ... gttcctgcagGTTCTGGATCTCGTAGTACATATGAATCATGCTAGACCGATGTCAACAGCA