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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGCATTTGGTCTCGGTAAGCTCAAACTTCCGTTAGATGAGGTCAGGTTAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttctaaattccagcttttggatcataatctaaagtcttcacaatgttaataacccttcattcaaacag

Basic information

species Zea mays
transcript GRMZM2G111511_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111511_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g56400.1 (Oryza sativa), 5'ss of exon 3
TGTAGCATTTGGTCTCGGTAAGCTCAAACTTCCGTTAGATGAGGTCAGGTTAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttctaaattccagcttttggatcataatctaaagtcttcacaatgttaata---acccttcattcaa-acag
||| ||||||||||| ||||||||||| ||| |||| |||||||| |||| ||| |||||| ||||  ||||||| || || ||||| ||||||||||| ||||||  || |  | |  ||||||||| ||||||||  |||| ||||| ||| | |   | ||||||| ||| ||||
TGTTGCATTTGGTCTTGGTAAGCTCAACCTTTCGTTGGATGAGGTTAGGTCAAGAGTATCACAATCACTGGATGCTGTGGGAATGTTAAGCTACTCTCAAgtaggcagctgacatgctccttttggattataatctattgtctgcacaaggttcacaaacatccttcatccaacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18173493|gb|BM348881.1|BM348881
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|211373270|gb|FL465535.1|FL465535
EST:     TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTYTCAG                         AGGCCAATCCAAACTYTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|17931952|gb|BM268912.1|BM268912
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|211053231|gb|FL127757.1|FL127757
EST:     TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|60394524|gb|DN227394.1|DN227394
EST:     TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|14243054|gb|BG840773.2|BG840773
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|18169738|gb|BM339578.1|BM339578
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|14242742|gb|BG840544.2|BG840544
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGCGGGCAGAAACAGAGAGTTGC
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGC
EST: gi|32866994|gb|CF006676.1|CF006676
EST:     TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG                         AGGCCGATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|74238567|gb|DT646481.1|DT646481
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|18165876|gb|BM335715.1|BM335715
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTATGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: gi|17932020|gb|BM268980.1|BM268980
EST:     TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG                         AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT