1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GTCCTAGAAGCATTAGATGGAGTTCGCACAAGGCCTGGTATGTACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaatgcgatattatgcttctgttcctgcatttttaacgcgttctgctttatgtcttatttggtcattgttttggttggtttatcatag
species | Zea mays |
transcript | GRMZM2G111014_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32926908|gb|CF031720.1|CF031720
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925623|gb|CF030435.1|CF030435
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925026|gb|CF029838.1|CF029838
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925749|gb|CF030561.1|CF030561
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925219|gb|CF030031.1|CF030031
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925064|gb|CF029876.1|CF029876
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925690|gb|CF030502.1|CF030502
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925570|gb|CF030382.1|CF030382
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925327|gb|CF030139.1|CF030139
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925639|gb|CF030451.1|CF030451
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925015|gb|CF029827.1|CF029827
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925454|gb|CF030266.1|CF030266
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32926273|gb|CF031085.1|CF031085
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925309|gb|CF030121.1|CF030121
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925339|gb|CF030151.1|CF030151
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTEST: gi|32925242|gb|CF030054.1|CF030054
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
EST: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
genomic: ACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaa ... tttatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTAGAAGCATTAGATGGAGTTCGCACAAGGCCTGGTATGTACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTGgtatatcaaatgcgatattatgcttctgttcctgcatttttaacgcgttctgctttatgtcttatttggtcattgttttggttggtttatcatag
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCA