1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCACAGCCCCAGGAATGGCGAAGCATGCTGGAGCCTACTGGTTTGGAAGTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacatttcatactccaatccaatgttgagtctgataaaagtattcagcgtggtcttaatgtaaaggaaaagaaaacatgatccttcgtacatgtcagaaacaggaaaatcagaaaaggcttatcagtgtaataatgcagcttccttatgaatattgatcatcactaacacagtccctacttcatcccag
species | Zea mays |
transcript | GRMZM2G110735_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAAEST: gi|67022056|gb|CO450805.1|CO450805
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAAEST: gi|40336598|gb|CK370668.1|CK370668
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAAEST: gi|211210848|gb|FL335709.1|FL335709
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGAGACTCTTCCTAAGTCCAGGGTACCCTTACGAAEST: gi|21891489|gb|BQ744702.1|BQ744702
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAAEST: gi|32832826|gb|CD972504.1|CD972504
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
EST: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTEST: gi|23357502|gb|BU645151.1|BU645151
genomic: GTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGT
EST: TCCAAACTATGGAGTATTTACCCTGGGATGACAAACTTCCAGGAGCTCAG GTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
genomic: TCCAAACTATGGAGTATTTA-CCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacat ... ttcatcccagGTTCTTCTCAGCAGGTTGCGACTCTTCCTAAGTCCAGGGTACCCTTACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCACAGCCCCAGGAATGGCGAAGCATGCTGGAGCCTACTGGTTTGGAAGTCCAAACTATGGAGTATTTACCTGGGATGACAAACTTCCAGGAGCTCAGgttagcacatttcatactccaatccaatgttgagtctgataaaagtattcagcgtggtcttaatgtaaaggaaaagaaaacatgatccttcgtacatgtcagaaacaggaaaatcagaaaaggcttatcagtgtaataatgcagcttccttatgaatattgatcatcactaacacagtccctacttcatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA