Sequence
atgc intronic sequence ATGC exonic sequenceGATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 5
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttc----gatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatat-taagaaaaagaccttctc------------------------------------
|||||||| |||||||| ||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| | |||||||| |||| ||| | | || ||| |||| | | | | | | | | | || | || | | || | ||||| | ||
GATAAGAAGTTGTTTAACAAAACTTTATGCAAAAGACATAACTCCAGATGAGAAGCAGGAACTCGATGAAGCACTTAAGAGAGAGgtgatttcctttttgtaggagcttggattatgagtggcaca-agaccactatagtgattatttcaacaatcagcaagatttgtcatacatcaaaaatatatttatatgattctaattccttatattttttcttatgttcag
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 4
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcata--ttagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc--
|||||| || |||||| ||||| | ||||| || ||||||||||| ||||| || ||||| |||||||| || || ||||| ||||| | | | | ||| || || || |||| | ||||| | | | | | || ||| | || || |
GATAAGGAATTGTTTATCTCAATTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAGgtgagt-gtcaaaacctttaggattagtttgatgttttgccaaactgcaac-aagtaaccattacttttttttt--catcacatcaatgccttcgtttggagtt
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G33820.1 (Glycine max), 5'ss of exon 3
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcatt-atattaagaaaaagaccttctc-
|||||| || ||||| || ||| | ||||| |||||||| || |||||||| || |||||||||||||| || | ||||||||||| || ||| | | || || || | | | | | | | || | | ||| ||| | | | || |
GATAAGGAATTGTTTGACACAATTATATGCTAAGGACATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGgtgcatt-cttgattccatatacaatatataattctgtcagtcacagatttcacatcc-tgataattctgagttgattgatacttacctatagtttctagtt
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G36670.1 (Glycine max), 5'ss of exon 4
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc---------
||| ||||| || ||| | ||||| |||||||| || |||||||| || |||||||||||||| || | |||||||||||| || | ||| | ||| | ||||||| || | | | | | | | | || ||| | || | || || |
-----GAATTTGTTTGACACAATTATATGCTAAGGACATTACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGgtacattcttg----attcccatatacaa----tatataatgct-gtcaatcaaagatttcatcacatcctgataattctgagttgattgacactttacctatagtttc
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G42600.1 (Arabidopsis thaliana), 5'ss of exon 4
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc
||| | | ||||| || || | |||||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||| ||||||||| || | || | ||||| || | | | | | || | | || | | |
GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAGgtaag--------------cgaaactaaagaactcaataaagcttcttttgcatgaattctactaaaactctgtttttgttgcaccag------------
upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G14940.1 (Arabidopsis thaliana), 5'ss of exon 4
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaa----tttgcttcgat--atttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc
|||||| ||||| | ||||||| |||||||||||||| ||||| ||||| || ||||| || ||||| | || ||||||||||||| | | || | ||| ||| || | | |||||| |||| | | || ||| | | || ||
GATAAGGGACTGTCTTGCTCAACTCTATGCAAAGGACATTACTCCTGATGACAAGCAGGAGCTAGATGAGTCTCTGCAAAGAGAGgtaagaactcaacctcactggattgtaacatgttgatttgatataatcctcggataataga--tagattggcctttgaaactctccttttttgtttag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56691567|gb|CX129470.1|CX129470EST: ACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAG ATTCAAGCTGCCTTTAGAACTGATGAAATCAGGCGGGCGCCTCCTACTCCG
genomic: ACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgct ... ttatctacagATTCAAGCTGCCTTTAGAACTGATGAAATCAGGCGGGCGCCTCCTACTCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATAAGAAACTGTTTAACTCAACTTTATGCAAAGGACATCACTCCAGATGAGAAACAGGAACTTGATGAAGCACTTCAAAGAGAGgtaatttgcttcgatatttcggcatattagtgttatataaaactcgacctacgggggtacgaccgcccccacggcattatattaagaaaaagaccttctc
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA