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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaatataattcatactgtcttgatgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacag

Basic information

species Zea mays
transcript GRMZM2G110398_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110398_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g65986.1 (Oryza sativa), 5'ss of exon 3
TGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaatataattcatact------gtcttga-------tgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacag
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || || ||||||||||| || |||||||| || |||||| |  ||  |   | |||       ||||||       ||||| ||||||    ||  |  | ||||| |||||  |  || |||  ||||   ||||
TGATTGTTGGAGAAGTAGCTAACTTTGCAGCATATGCCTTTGCTCCTGCTATCTTAGTAACCCCACTTGGTGCGCTAAGCATCATCATCAGgtaacagctagcacctacacttccctaatcttgagatctcctgctgtttatattttcat--cagtctgttcattcttcatcttagcatatttcttctacag

upper sequence: GRMZM2G110398_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 3
TGATTGTTGGAGAAGTGGCTAACTTTGCAGCATATGCTTTTGCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaatataatt-catactgtcttgatgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacag
||||||| ||||||||||| |||||  | || || || |||||||| ||| |||||||||| || ||||| ||||| ||||| ||| | ||||  |   | |  |  |     ||  |    |   | || ||    | | |    |||| || |  ||| |    | |||    ||   
TGATTGTGGGAGAAGTGGCCAACTTCACTGCCTACGCGTTTGCTCCGGCTGTCTTGGTCACTCCGCTTGGCGCACTGAGCATAATAGTCAGgttcgtcttttggtgactcgtagtggtagcacacttcatttccgggt-tgcaagggttcattttgatttatgtatttcttgatgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489649|gb|BU049585.1|BU049585
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCCCTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
EST: gi|87152947|gb|DY397736.1|DY397736
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCCCTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
EST: gi|60340735|gb|DN207708.1|DN207708
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT