1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAGCAATATTTCTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtccttgttcatgttctcatataattgtttatggttaacttcttataagcgtaataggccgtatttatagacagtctgctctgatagaaaactctgataatatgaatatgcaaatattccttattatgattatttattgctttctcaataaaacattgcag
species | Zea mays |
transcript | GRMZM2G110233_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|84980362|gb|DW530711.1|DW530711
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|29543698|gb|CB604078.1|CB604078
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGCTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|213177969|gb|FM186729.1|FM186729
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGNNNCTCATGGCACTTCCCTGAGCTTGTCAAGANNGTGAATGACAAEST: gi|15427341|gb|BI543163.1|BI543163
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACEST: gi|32930087|gb|CF034899.1|CF034899
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCAC
EST: ATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|87157139|gb|DY401928.1|DY401928
genomic: ATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTEST: gi|13177896|gb|BG349079.1|BG349079
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCT
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|84980547|gb|DW530896.1|DW530896
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAAEST: gi|24934839|gb|CA453057.1|CA453057
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTTGTCAAGATTGTGAATGACAA
EST: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAG GGAATGGTTCTCATGGCACTTCCCTGAGCTT
genomic: CTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtcct ... aacattgcagGGAATGGTTCTCATGGCACTTCCCTGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAGCAATATTTCTGCTGGATACACTTGACAAGGACATCAATTCCTTCTCCATGAGAGTCAGgtactgtccttgttcatgttctcatataattgtttatggttaacttcttataagcgtaataggccgtatttatagacagtctgctctgatagaaaactctgataatatgaatatgcaaatattccttattatgattatttattgctttctcaataaaacattgcag
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